Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40133
         (873 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17117| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)              28   8.7  

>SB_17117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 275 QLIHTYYTTSFCFVLFRVILVVYRY 349
           Q ++      FCFVLFRV +VVYR+
Sbjct: 43  QSVNVVNLLRFCFVLFRVYVVVYRH 67


>SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)
          Length = 434

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
 Frame = +1

Query: 82  YHQLFHKMHLFCTRS*EHSFEKVY--HGPLNTKHIITSQMTHFELLH*RCTYHLIAFVHL 255
           YH  F + H FC      S    Y  H      HI  +  TH  + H   T+H I     
Sbjct: 3   YHPCFRR-HCFCIFVTHASTTHPYITHASTTHPHIAHASTTHPYITHASTTHHYIVHAST 61

Query: 256 LHDFL 270
            H ++
Sbjct: 62  THPYI 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,827,320
Number of Sequences: 59808
Number of extensions: 413963
Number of successful extensions: 582
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2503194881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)