Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40133
         (873 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   1.2  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   8.5  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   8.5  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 771 VNFGGMAVKTFKKXSLNQVFKAKNWLR 851
           VNFG   V+       NQ+ K+  WLR
Sbjct: 54  VNFGLAFVQLINVNEKNQIMKSNVWLR 80


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 278 LIHTYYTTSFCFVLFRVILVV 340
           LI  YY  S C V F   L V
Sbjct: 274 LISLYYGVSICLVTFASALAV 294


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 215 IEDARIILLLLYIYFM 262
           IED   ILL+ YIY +
Sbjct: 114 IEDTEPILLIAYIYHL 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,705
Number of Sequences: 438
Number of extensions: 3735
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)