Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40133
         (873 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g25450.1 68414.m03160 very-long-chain fatty acid condensing e...    32   0.44 

>At1g25450.1 68414.m03160 very-long-chain fatty acid condensing
           enzyme, putative nearly identical to fatty acid
           condensing enzyme CUT1 GI:5001734 from [Arabidopsis
           thaliana]
          Length = 492

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 24/75 (32%), Positives = 33/75 (44%)
 Frame = +1

Query: 136 SFEKVYHGPLNTKHIITSQMTHFELLH*RCTYHLIAFVHLLHDFLLPINPHXXXXXXXXC 315
           + E +  GP     ++ S   HFELLH  C+  LI FV  ++ F+    P         C
Sbjct: 37  AIELLRMGPEEILSVLNS--LHFELLHILCSSFLIIFVSTVY-FM--SKPRTVYLVDYSC 91

Query: 316 FV*SNTCRVPLPPAM 360
           +    TCRVP    M
Sbjct: 92  YKPPVTCRVPFSSFM 106


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,919,180
Number of Sequences: 28952
Number of extensions: 281318
Number of successful extensions: 411
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2048424000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)