Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40132
(884 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.94
SB_47549| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_13735| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4) 29 5.0
SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06) 29 5.0
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 29 6.6
SB_55898| Best HMM Match : Carb_anhydrase (HMM E-Value=3.6) 29 6.6
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_17878| Best HMM Match : Drf_FH1 (HMM E-Value=0.022) 28 8.7
>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1929
Score = 31.5 bits (68), Expect = 0.94
Identities = 24/74 (32%), Positives = 30/74 (40%)
Frame = +2
Query: 500 PFDSTSPTC*TSLVMKKGRHQSRSWEPSSSKTESRYRARSRSVQARRCPWEIFLNNESAS 679
P +S SP S + +SRS S ESR A SR P+E E +S
Sbjct: 1659 PLESRSPFESNSSFQSRSTTESRSSAESRLPAESRLPAESRLPYESHSPYESRYPTEPSS 1718
Query: 680 VYGLLVTTCTSPTP 721
Y + V T P P
Sbjct: 1719 AYPITVIK-TLPAP 1731
>SB_47549| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 29.9 bits (64), Expect = 2.9
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Frame = +3
Query: 675 PASMAFW*LHARHRHRGTAGNGNLNGCSVARIWLRTSSPPDGDT--LTAKFQSFPSSRVT 848
P+S +W L A ++G N +GC V WL P + DT T PS T
Sbjct: 108 PSSDKWWLLQA---NKGHPSNKTGSGCHVFGFWLEEQEPEESDTSKQTVPSPLSPSKATT 164
Query: 849 TYGSSF 866
SF
Sbjct: 165 PLPLSF 170
>SB_13735| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 487 LQSIPFRLDEPNVLNITRYEEGKAPEPVLGAIVKQNGKQVSGEIS-VSPGTPLSMGDIPE 663
L+ + + D P V N T +G+ P P G +V+Q G + +++ + L +G I
Sbjct: 46 LRELGLKADNPGVYNGTWGGKGETPGPKRGEVVRQIGHALREKLTPLGKLLSLEVGKIFP 105
Query: 664 QRVGQ 678
+ VG+
Sbjct: 106 EGVGE 110
>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
Length = 428
Score = 29.1 bits (62), Expect = 5.0
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +2
Query: 461 KHHNLTKRDSRAFPFDSTSPTC*TSLVMKKGRHQSRSWE----PSSSKTESRYRARSRS 625
KH +KRD S+S + K R +SRS E S TE RYR+RSRS
Sbjct: 291 KHKRKSKRDRSRSRDRSSSKSKSLRRSKKYSRSRSRSSERRRRSRSRSTEHRYRSRSRS 349
>SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)
Length = 1223
Score = 29.1 bits (62), Expect = 5.0
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +2
Query: 455 SGKHHNLTK-RDSRAFPFDSTSPTC*TSLVMKKGRHQSRSWEPSSSKTESRYRARSRSVQ 631
S H ++ R S + SP+ S + R QS+S S S++ SR R+RSRS
Sbjct: 17 SSNHSRRSRSRGSNGSRGKAQSPSGSRSRSRSRSRSQSQSRSRSRSRSRSRSRSRSRSRS 76
Query: 632 ARR 640
+ R
Sbjct: 77 SSR 79
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +2
Query: 548 KGRHQSRSWEPSSSKTESRYRARSRS 625
+ R +SRS SSS++ SR R+RSRS
Sbjct: 65 RSRSRSRSRSRSSSRSRSRSRSRSRS 90
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 554 RHQSRSWEPSSSKTESRYRARSRSVQARRC 643
R++SRS P +++S R R+RS RRC
Sbjct: 342 RYRSRSRPPRGRRSQSPRRRRTRSRSRRRC 371
>SB_55898| Best HMM Match : Carb_anhydrase (HMM E-Value=3.6)
Length = 531
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 445 LRLKREAPQSNEEGLQSIPFRLDEPNVLNITRYEE 549
+R K++A QSNE L + EP+ ++T+YEE
Sbjct: 182 IRFKQDAFQSNERPLPDVTLSAAEPD-KDVTQYEE 215
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +2
Query: 458 GKHHNLTKRDSRAFPFDSTSPTC*TSLVMKKGRHQSRSWEPSSSKTESRYRARSRS 625
G+ ++R SR+ S+S + S +GR + RS SSS+ R R+RS S
Sbjct: 684 GRGRKRSRRRSRSSSHSSSSLSRSRSRSRSRGRGRRRSRSRSSSRKGKRQRSRSWS 739
>SB_17878| Best HMM Match : Drf_FH1 (HMM E-Value=0.022)
Length = 664
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +1
Query: 466 PQSNEEGLQSIPFRLDEPNVLNITRYEEGKAPEPVLGAIVKQNGKQVS-GEISVSP 630
P EG + +L + N TR+++G+ P + NGK GE SP
Sbjct: 46 PPGKSEGYVVVSTKLQNRRLENQTRWDKGRPPGGEIATARNTNGKGAKRGESPTSP 101
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,825,252
Number of Sequences: 59808
Number of extensions: 662000
Number of successful extensions: 1632
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1616
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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