Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40132
(884 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC036187-1|AAH36187.1| 904|Homo sapiens serine/arginine repetit... 33 1.8
AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetit... 33 1.8
AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetit... 33 1.8
BC017247-1|AAH17247.1| 653|Homo sapiens FUBP1 protein protein. 32 2.4
L14076-1|AAA36649.1| 494|Homo sapiens pre-mRNA splicing factor ... 31 5.6
BT007415-1|AAP36083.1| 494|Homo sapiens splicing factor, argini... 31 5.6
BC002781-1|AAH02781.1| 494|Homo sapiens splicing factor, argini... 31 5.6
AL590729-1|CAI14326.1| 494|Homo sapiens splicing factor, argini... 31 5.6
AL359846-6|CAH73579.1| 2261|Homo sapiens ATP-binding cassette, s... 31 5.6
AL357500-1|CAH71635.1| 494|Homo sapiens splicing factor, argini... 31 5.6
AL353685-3|CAH72444.1| 2261|Homo sapiens ATP-binding cassette, s... 31 5.6
AK223444-1|BAD97164.1| 382|Homo sapiens splicing factor, argini... 31 5.6
AJ012376-1|CAA10005.1| 2201|Homo sapiens ATP-binding cassette tr... 31 5.6
AF287262-1|AAK43526.1| 2261|Homo sapiens ATP-binding cassette 1 ... 31 5.6
AF285167-1|AAF98175.1| 2261|Homo sapiens ATP-binding cassette tr... 31 5.6
AF275948-1|AAF86276.1| 2261|Homo sapiens ABCA1 protein. 31 5.6
AF165286-1|AAD49851.1| 344|Homo sapiens ATP cassette binding tr... 31 5.6
AF165281-1|AAD49849.1| 2201|Homo sapiens ATP cassette binding tr... 31 5.6
AB209856-1|BAD93093.1| 419|Homo sapiens splicing factor, argini... 31 5.6
AB055982-1|BAB63210.1| 2261|Homo sapiens ABCA1 protein. 31 5.6
AE006463-5|AAK61225.1| 321|Homo sapiens unknown protein. 31 7.3
>BC036187-1|AAH36187.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 32.7 bits (71), Expect = 1.8
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 548 KGRHQSRSWEPSSSKTESRYRARSRSVQARRCP 646
K R ++RS PS ++ R+R+RSRS RR P
Sbjct: 283 KSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRP 315
>AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 32.7 bits (71), Expect = 1.8
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 548 KGRHQSRSWEPSSSKTESRYRARSRSVQARRCP 646
K R ++RS PS ++ R+R+RSRS RR P
Sbjct: 283 KSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRP 315
>AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 32.7 bits (71), Expect = 1.8
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 548 KGRHQSRSWEPSSSKTESRYRARSRSVQARRCP 646
K R ++RS PS ++ R+R+RSRS RR P
Sbjct: 283 KSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRP 315
>BC017247-1|AAH17247.1| 653|Homo sapiens FUBP1 protein protein.
Length = 653
Score = 32.3 bits (70), Expect = 2.4
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +1
Query: 454 KREAPQSNEEGLQSIPFRLDEPNVLNITRYEEGKAPEPVLGAIVKQNGKQVS 609
K+ APQ++ G Q P + +V+ EE K P+ ++G I+ + G+Q+S
Sbjct: 76 KKVAPQNDSFGTQLPPMHQQQRSVMT----EEYKVPDGMVGFIIGRGGEQIS 123
>L14076-1|AAA36649.1| 494|Homo sapiens pre-mRNA splicing factor
protein.
Length = 494
Score = 31.1 bits (67), Expect = 5.6
Identities = 30/92 (32%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = +2
Query: 353 RVLNKISGSRTFYHNI-LIEGLDGNREAISVRCVLSGKHHNLTKRDSRAFPFDSTSPTC* 529
R L K+ G+ I L+E G+R S S R SR S S +
Sbjct: 155 RALEKLDGTEVNGRKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRK----SRSRSGS 210
Query: 530 TSLVMKKGRHQSRSWEPSSSKTESRYRARSRS 625
+ K R +SRS S SK+ SR ++RSRS
Sbjct: 211 SKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRS 242
>BT007415-1|AAP36083.1| 494|Homo sapiens splicing factor,
arginine/serine-rich 4 protein.
Length = 494
Score = 31.1 bits (67), Expect = 5.6
Identities = 30/92 (32%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = +2
Query: 353 RVLNKISGSRTFYHNI-LIEGLDGNREAISVRCVLSGKHHNLTKRDSRAFPFDSTSPTC* 529
R L K+ G+ I L+E G+R S S R SR S S +
Sbjct: 155 RALEKLDGTEVNGRKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRK----SRSRSGS 210
Query: 530 TSLVMKKGRHQSRSWEPSSSKTESRYRARSRS 625
+ K R +SRS S SK+ SR ++RSRS
Sbjct: 211 SKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRS 242
>BC002781-1|AAH02781.1| 494|Homo sapiens splicing factor,
arginine/serine-rich 4 protein.
Length = 494
Score = 31.1 bits (67), Expect = 5.6
Identities = 30/92 (32%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = +2
Query: 353 RVLNKISGSRTFYHNI-LIEGLDGNREAISVRCVLSGKHHNLTKRDSRAFPFDSTSPTC* 529
R L K+ G+ I L+E G+R S S R SR S S +
Sbjct: 155 RALEKLDGTEVNGRKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRK----SRSRSGS 210
Query: 530 TSLVMKKGRHQSRSWEPSSSKTESRYRARSRS 625
+ K R +SRS S SK+ SR ++RSRS
Sbjct: 211 SKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRS 242
>AL590729-1|CAI14326.1| 494|Homo sapiens splicing factor,
arginine/serine-rich 4 protein.
Length = 494
Score = 31.1 bits (67), Expect = 5.6
Identities = 30/92 (32%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = +2
Query: 353 RVLNKISGSRTFYHNI-LIEGLDGNREAISVRCVLSGKHHNLTKRDSRAFPFDSTSPTC* 529
R L K+ G+ I L+E G+R S S R SR S S +
Sbjct: 155 RALEKLDGTEVNGRKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRK----SRSRSGS 210
Query: 530 TSLVMKKGRHQSRSWEPSSSKTESRYRARSRS 625
+ K R +SRS S SK+ SR ++RSRS
Sbjct: 211 SKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRS 242
>AL359846-6|CAH73579.1| 2261|Homo sapiens ATP-binding cassette,
sub-family A (ABC1), memberisiae) protein.
Length = 2261
Score = 31.1 bits (67), Expect = 5.6
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 13 IIALKLMNFMENYIHL*YIFVFLTTF-INYILQTFNLHYIHQLCIFARLIAAFQIYIYFT 189
++ LKL N + Y +FVFL+ F + ILQ F I L A L AA IYFT
Sbjct: 701 VVILKLGNLLP-YSDPSVVFVFLSVFAVVTILQCF---LISTLFSRANLAAACGGIIYFT 756
Query: 190 NFVPHV 207
++P+V
Sbjct: 757 LYLPYV 762
>AL357500-1|CAH71635.1| 494|Homo sapiens splicing factor,
arginine/serine-rich 4 protein.
Length = 494
Score = 31.1 bits (67), Expect = 5.6
Identities = 30/92 (32%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = +2
Query: 353 RVLNKISGSRTFYHNI-LIEGLDGNREAISVRCVLSGKHHNLTKRDSRAFPFDSTSPTC* 529
R L K+ G+ I L+E G+R S S R SR S S +
Sbjct: 155 RALEKLDGTEVNGRKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRK----SRSRSGS 210
Query: 530 TSLVMKKGRHQSRSWEPSSSKTESRYRARSRS 625
+ K R +SRS S SK+ SR ++RSRS
Sbjct: 211 SKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRS 242
>AL353685-3|CAH72444.1| 2261|Homo sapiens ATP-binding cassette,
sub-family A (ABC1), memberog, Drosophila) protein.
Length = 2261
Score = 31.1 bits (67), Expect = 5.6
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 13 IIALKLMNFMENYIHL*YIFVFLTTF-INYILQTFNLHYIHQLCIFARLIAAFQIYIYFT 189
++ LKL N + Y +FVFL+ F + ILQ F I L A L AA IYFT
Sbjct: 701 VVILKLGNLLP-YSDPSVVFVFLSVFAVVTILQCF---LISTLFSRANLAAACGGIIYFT 756
Query: 190 NFVPHV 207
++P+V
Sbjct: 757 LYLPYV 762
>AK223444-1|BAD97164.1| 382|Homo sapiens splicing factor,
arginine/serine-rich 4 variant protein.
Length = 382
Score = 31.1 bits (67), Expect = 5.6
Identities = 30/92 (32%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = +2
Query: 353 RVLNKISGSRTFYHNI-LIEGLDGNREAISVRCVLSGKHHNLTKRDSRAFPFDSTSPTC* 529
R L K+ G+ I L+E G+R S S R SR S S +
Sbjct: 155 RALEKLDGTEVNGRKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRK----SRSRSGS 210
Query: 530 TSLVMKKGRHQSRSWEPSSSKTESRYRARSRS 625
+ K R +SRS S SK+ SR ++RSRS
Sbjct: 211 SKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRS 242
>AJ012376-1|CAA10005.1| 2201|Homo sapiens ATP-binding cassette
transporter-1 (ABC-1) protein.
Length = 2201
Score = 31.1 bits (67), Expect = 5.6
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 13 IIALKLMNFMENYIHL*YIFVFLTTF-INYILQTFNLHYIHQLCIFARLIAAFQIYIYFT 189
++ LKL N + Y +FVFL+ F + ILQ F I L A L AA IYFT
Sbjct: 641 VVILKLGNLLP-YSDPSVVFVFLSVFAVVTILQCF---LISTLFSRANLAAACGGIIYFT 696
Query: 190 NFVPHV 207
++P+V
Sbjct: 697 LYLPYV 702
>AF287262-1|AAK43526.1| 2261|Homo sapiens ATP-binding cassette 1
sub-family A member 1 protein.
Length = 2261
Score = 31.1 bits (67), Expect = 5.6
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 13 IIALKLMNFMENYIHL*YIFVFLTTF-INYILQTFNLHYIHQLCIFARLIAAFQIYIYFT 189
++ LKL N + Y +FVFL+ F + ILQ F I L A L AA IYFT
Sbjct: 701 VVILKLGNLLP-YSDPSVVFVFLSVFAVVTILQCF---LISTLFSRANLAAACGGIIYFT 756
Query: 190 NFVPHV 207
++P+V
Sbjct: 757 LYLPYV 762
>AF285167-1|AAF98175.1| 2261|Homo sapiens ATP-binding cassette
transporter 1 protein.
Length = 2261
Score = 31.1 bits (67), Expect = 5.6
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 13 IIALKLMNFMENYIHL*YIFVFLTTF-INYILQTFNLHYIHQLCIFARLIAAFQIYIYFT 189
++ LKL N + Y +FVFL+ F + ILQ F I L A L AA IYFT
Sbjct: 701 VVILKLGNLLP-YSDPSVVFVFLSVFAVVTILQCF---LISTLFSRANLAAACGGIIYFT 756
Query: 190 NFVPHV 207
++P+V
Sbjct: 757 LYLPYV 762
>AF275948-1|AAF86276.1| 2261|Homo sapiens ABCA1 protein.
Length = 2261
Score = 31.1 bits (67), Expect = 5.6
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 13 IIALKLMNFMENYIHL*YIFVFLTTF-INYILQTFNLHYIHQLCIFARLIAAFQIYIYFT 189
++ LKL N + Y +FVFL+ F + ILQ F I L A L AA IYFT
Sbjct: 701 VVILKLGNLLP-YSDPSVVFVFLSVFAVVTILQCF---LISTLFSRANLAAACGGIIYFT 756
Query: 190 NFVPHV 207
++P+V
Sbjct: 757 LYLPYV 762
>AF165286-1|AAD49851.1| 344|Homo sapiens ATP cassette binding
transporter 1 protein.
Length = 344
Score = 31.1 bits (67), Expect = 5.6
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 13 IIALKLMNFMENYIHL*YIFVFLTTF-INYILQTFNLHYIHQLCIFARLIAAFQIYIYFT 189
++ LKL N + Y +FVFL+ F + ILQ F I L A L AA IYFT
Sbjct: 198 VVILKLGNLLP-YSDPSVVFVFLSVFAVVTILQCF---LISTLFSRANLAAACGGIIYFT 253
Query: 190 NFVPHV 207
++P+V
Sbjct: 254 LYLPYV 259
>AF165281-1|AAD49849.1| 2201|Homo sapiens ATP cassette binding
transporter 1 protein.
Length = 2201
Score = 31.1 bits (67), Expect = 5.6
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 13 IIALKLMNFMENYIHL*YIFVFLTTF-INYILQTFNLHYIHQLCIFARLIAAFQIYIYFT 189
++ LKL N + Y +FVFL+ F + ILQ F I L A L AA IYFT
Sbjct: 641 VVILKLGNLLP-YSDPSVVFVFLSVFAVVTILQCF---LISTLFSRANLAAACGGIIYFT 696
Query: 190 NFVPHV 207
++P+V
Sbjct: 697 LYLPYV 702
>AB209856-1|BAD93093.1| 419|Homo sapiens splicing factor,
arginine/serine-rich 4 variant protein.
Length = 419
Score = 31.1 bits (67), Expect = 5.6
Identities = 30/92 (32%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = +2
Query: 353 RVLNKISGSRTFYHNI-LIEGLDGNREAISVRCVLSGKHHNLTKRDSRAFPFDSTSPTC* 529
R L K+ G+ I L+E G+R S S R SR S S +
Sbjct: 80 RALEKLDGTEVNGRKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRK----SRSRSGS 135
Query: 530 TSLVMKKGRHQSRSWEPSSSKTESRYRARSRS 625
+ K R +SRS S SK+ SR ++RSRS
Sbjct: 136 SKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRS 167
>AB055982-1|BAB63210.1| 2261|Homo sapiens ABCA1 protein.
Length = 2261
Score = 31.1 bits (67), Expect = 5.6
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 13 IIALKLMNFMENYIHL*YIFVFLTTF-INYILQTFNLHYIHQLCIFARLIAAFQIYIYFT 189
++ LKL N + Y +FVFL+ F + ILQ F I L A L AA IYFT
Sbjct: 701 VVILKLGNLLP-YSDPSVVFVFLSVFAVVTILQCF---LISTLFSRANLAAACGGIIYFT 756
Query: 190 NFVPHV 207
++P+V
Sbjct: 757 LYLPYV 762
>AE006463-5|AAK61225.1| 321|Homo sapiens unknown protein.
Length = 321
Score = 30.7 bits (66), Expect = 7.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 623 TEISPDTCFPFCLTMAPKTGSGAFPSS 543
TE PDTC P C + P+ G G S
Sbjct: 195 TESGPDTCTPQCPAVPPRAGKGTLNGS 221
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,104,842
Number of Sequences: 237096
Number of extensions: 3197468
Number of successful extensions: 6910
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 6176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6846
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11326166088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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