Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40132
         (884 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/...    34   0.12 
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/...    34   0.12 
AF026212-2|AAF99972.1| 1009|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z49889-2|CAD44149.1|  553|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z49889-1|CAA90066.2|  591|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U21323-12|AAA62554.2|  354|Caenorhabditis elegans Hypothetical p...    29   5.8  
AL021479-3|CAA16324.1|  279|Caenorhabditis elegans Hypothetical ...    29   5.8  
AF106592-4|AAK21366.1|  786|Caenorhabditis elegans Hypothetical ...    29   5.8  

>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           c protein.
          Length = 1510

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = +2

Query: 461 KHHNLTKRDSRAFPFDSTSPTC*TSLVMKKGRHQSRSWEPSSSKTESRYRARSRS 625
           K  N +K+DSRAF +DST  +   +   + GR Q+RS E     T S    R  S
Sbjct: 484 KSPNRSKKDSRAFGWDSTDESDEDTRRRRSGRSQNRSSERKFQTTSSSSTRRELS 538


>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           a protein.
          Length = 1507

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = +2

Query: 461 KHHNLTKRDSRAFPFDSTSPTC*TSLVMKKGRHQSRSWEPSSSKTESRYRARSRS 625
           K  N +K+DSRAF +DST  +   +   + GR Q+RS E     T S    R  S
Sbjct: 484 KSPNRSKKDSRAFGWDSTDESDEDTRRRRSGRSQNRSSERKFQTTSSSSTRRELS 538


>AF026212-2|AAF99972.1| 1009|Caenorhabditis elegans Hypothetical
           protein F52G3.4 protein.
          Length = 1009

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
 Frame = +1

Query: 475 NEEGLQSIPFRLDEPNVLNITRYEEGKAPEPVLG----AIVKQNG----KQVSGEISVSP 630
           +EEG    PF L++  +L   +YE+ +     +G      + +NG    K+V  +I V  
Sbjct: 565 DEEGKLEDPFNLNDDQILTYGKYEDRQEDSDEVGQQRQVYIIKNGRLQPKRVFMDIPVQF 624

Query: 631 GTPLSMGDIPEQRVGQRLWP 690
           G PL   +  E+   QR +P
Sbjct: 625 GNPLFPKEFYEEVDPQRRFP 644


>Z49889-2|CAD44149.1|  553|Caenorhabditis elegans Hypothetical
           protein T06H11.1b protein.
          Length = 553

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = -3

Query: 654 ISHGQRRAWTDRDLARYLLSVLLDDGSQDRLWCLPFFITSDVQHVGLVESKGNALESLFV 475
           I HG+R++          L +L  DG++++LW   F I + V  + +  S G+A+   + 
Sbjct: 329 IRHGRRKSLQSTGGPNDTLDILGVDGTEEKLW---FPIGAYVSCICIYCSIGSAMFITWE 385

Query: 474 RLWCF 460
           R W F
Sbjct: 386 RTWSF 390


>Z49889-1|CAA90066.2|  591|Caenorhabditis elegans Hypothetical
           protein T06H11.1a protein.
          Length = 591

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = -3

Query: 654 ISHGQRRAWTDRDLARYLLSVLLDDGSQDRLWCLPFFITSDVQHVGLVESKGNALESLFV 475
           I HG+R++          L +L  DG++++LW   F I + V  + +  S G+A+   + 
Sbjct: 367 IRHGRRKSLQSTGGPNDTLDILGVDGTEEKLW---FPIGAYVSCICIYCSIGSAMFITWE 423

Query: 474 RLWCF 460
           R W F
Sbjct: 424 RTWSF 428


>U21323-12|AAA62554.2|  354|Caenorhabditis elegans Hypothetical
           protein C45G9.11 protein.
          Length = 354

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 19  ALKLMNFMENYIHL*YIFVFLTTFINYILQTFNL 120
           A  L+NF +  +H+ YIF   + FIN+    F++
Sbjct: 266 ARALVNFDKAVLHIHYIFCIFSFFINFFFLIFSI 299


>AL021479-3|CAA16324.1|  279|Caenorhabditis elegans Hypothetical
           protein Y22F5A.5 protein.
          Length = 279

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +3

Query: 735 NG-NLNGCSVARIWLRTSSP---PDGDTLTAKFQSFPSSRVTTYGSS 863
           NG N NG ++  +W++ +SP   P+  T    F +   SR   YG S
Sbjct: 127 NGLNNNGITIRSVWIQVTSPANWPNNPTANVNFINSIISRAQQYGLS 173


>AF106592-4|AAK21366.1|  786|Caenorhabditis elegans Hypothetical
           protein D1037.1 protein.
          Length = 786

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +2

Query: 545 KKGRHQSRSWEPSSSKTESRYRARSRSVQARR 640
           KK R +S++W  SSS++ SR R+RSR     R
Sbjct: 61  KKVRRRSKTW--SSSRSRSRSRSRSRGRSQER 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,319,077
Number of Sequences: 27780
Number of extensions: 492669
Number of successful extensions: 1294
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1291
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)