Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40132
         (884 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02340.1 68418.m00157 DC1 domain-containing protein contains ...    32   0.58 
At5g37010.1 68418.m04438 expressed protein                             31   0.77 
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30...    31   1.3  
At2g13950.1 68415.m01550 DC1 domain-containing protein contains ...    29   4.1  
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR...    29   5.4  
At5g08380.1 68418.m00987 alpha-galactosidase, putative / melibia...    28   7.2  
At4g37100.1 68417.m05255 hypothetical protein                          28   7.2  
At2g43850.2 68415.m05452 ankyrin protein kinase, putative (APK1)...    28   9.5  
At2g43850.1 68415.m05451 ankyrin protein kinase, putative (APK1)...    28   9.5  
At1g42440.1 68414.m04894 expressed protein contains Pfam domain,...    28   9.5  

>At5g02340.1 68418.m00157 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 631

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 144 FCTFDCSVPNIYLFYKFCTTCPHK*RLKCL 233
           FC   C + N+   Y FCTTC  K   +C+
Sbjct: 109 FCCSACKITNLGTAYYFCTTCRKKFHKECV 138


>At5g37010.1 68418.m04438 expressed protein
          Length = 637

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +2

Query: 509 STSPTC*TSLVMKKGRHQSRSWEPSSSKTESRYRARSRSVQAR 637
           S S T  + +V ++G   S SWEP+S+++  R   RS + Q R
Sbjct: 541 SNSFTGSSCVVQRQGYSSSSSWEPNSAESTDRVSMRSSNKQER 583


>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
           nearly identical to SC35-like splicing factor SCL30, 30
           kD [Arabidopsis thaliana] GI:9843657;
           Serine/arginine-rich protein/putative splicing factor,
           Arabidopdis thaliana, EMBL:AF099940; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 262

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +2

Query: 560 QSRSWEPSSSKTESRYRARSRSVQARRCP 646
           ++RS EPS S+  S  R+RSRS+   R P
Sbjct: 138 RTRSREPSGSRDRSHGRSRSRSISRSRSP 166


>At2g13950.1 68415.m01550 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 517

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 144 FCTFDCSVPNIYLFYKFCTTCPHK*RLKCL 233
           FC   C + N+   Y FC TC  K   +C+
Sbjct: 31  FCCSACKLTNLGTAYYFCATCRKKFHKECV 60


>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
           protein, putative strong similarity to SP|O22315
           Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
           thaliana}; cDNA NCBI_gi:15810292 supports a truncated
           version while protein evidence supports a longer model.
          Length = 278

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 24/65 (36%), Positives = 36/65 (55%)
 Frame = +2

Query: 443 RCVLSGKHHNLTKRDSRAFPFDSTSPTC*TSLVMKKGRHQSRSWEPSSSKTESRYRARSR 622
           R   S ++  + + DSR    DS SP+   S    K R + RS  PS S++ SR R++SR
Sbjct: 180 RNAFSHEYVRVREYDSRR---DSRSPSRGRSY--SKSRSRGRS--PSRSRSRSRSRSKSR 232

Query: 623 SVQAR 637
           S +A+
Sbjct: 233 SPKAK 237


>At5g08380.1 68418.m00987 alpha-galactosidase, putative / melibiase,
           putative / alpha-D-galactoside galactohydrolase,
           putative similar to alpha-galactosidase SP:Q42656 from
           [Coffea arabica]; contains Pfam profile PF02065:
           Melibiase
          Length = 410

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -3

Query: 477 VRLWCFPLKTQRTEIA--SRFPSRPSISMLW*NVRLP 373
           + +W  PL   R  +   +R PSR SI+ LW ++ +P
Sbjct: 332 LEVWAGPLSGYRVALLLLNRGPSRTSITALWEDIEIP 368


>At4g37100.1 68417.m05255 hypothetical protein
          Length = 896

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 568 VLGAIVKQNGKQVSGEISVSPGTPLSMGD 654
           V+G++  Q+GK  SG + ++P  PL + D
Sbjct: 384 VMGSLQSQSGKTGSGIVKITPEYPLYLSD 412


>At2g43850.2 68415.m05452 ankyrin protein kinase, putative (APK1)
           similar to ankyrin-kinase [Medicago truncatula]
           gi|18700701|gb|AAL78674;contains Pfam profile PF00069:
           Protein kinase domain; contains Pfam profile PF00023:
           Ankyrin repeat
          Length = 479

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +1

Query: 373 RQSNVLPQHTD*RSGREPRGYLCPLRLKREAPQSNEEGLQSIPFRLD 513
           RQS++ P+ T+ R     +  L P+R   ++ +S++E   S+P  LD
Sbjct: 31  RQSSLDPRRTNMRFSFGRQSSLDPIRRSPDSSKSDDEPHMSVPENLD 77


>At2g43850.1 68415.m05451 ankyrin protein kinase, putative (APK1)
           similar to ankyrin-kinase [Medicago truncatula]
           gi|18700701|gb|AAL78674;contains Pfam profile PF00069:
           Protein kinase domain; contains Pfam profile PF00023:
           Ankyrin repeat
          Length = 479

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +1

Query: 373 RQSNVLPQHTD*RSGREPRGYLCPLRLKREAPQSNEEGLQSIPFRLD 513
           RQS++ P+ T+ R     +  L P+R   ++ +S++E   S+P  LD
Sbjct: 31  RQSSLDPRRTNMRFSFGRQSSLDPIRRSPDSSKSDDEPHMSVPENLD 77


>At1g42440.1 68414.m04894 expressed protein contains Pfam domain,
           PF04950: Protein of unknown function (DUF663)
          Length = 793

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 637 PLSMGDIPEQRVGQRLWPSGDYMHVTDTGEQQG 735
           PL + + P+   G++ WP+ + M   D  ++QG
Sbjct: 343 PLVIENTPDPLAGEQTWPTEEEMAEADKNQKQG 375


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,998,944
Number of Sequences: 28952
Number of extensions: 450855
Number of successful extensions: 1149
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)