Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40131
(877 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase... 144 1e-35
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|... 144 1e-35
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c... 29 0.87
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces... 29 0.87
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 27 3.5
SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom... 26 6.1
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 26 6.1
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 26 8.1
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces... 26 8.1
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 26 8.1
>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 144 bits (350), Expect = 1e-35
Identities = 89/186 (47%), Positives = 111/186 (59%), Gaps = 1/186 (0%)
Frame = +3
Query: 249 F*GSVEVQDGFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGG 428
F GSVE++DG LV++GN I V +ERDP I W +GA+YV+ESTGVFTT + ASAHL+GG
Sbjct: 56 FDGSVEIKDGKLVIDGNAIDVHNERDPADIKWSTSGADYVIESTGVFTTQETASAHLKGG 115
Query: 429 AKKVIISAPSADAPMFVVGVNLEAYDPLLRSSQMLLAPQTVLPHLQRLFMITLKLFEGLM 608
AK+VIISAPS DAPM+VVGVN E ++P + L L ++ T + EGLM
Sbjct: 116 AKRVIISAPSKDAPMYVVGVNEEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLM 175
Query: 609 TTVHGHNCYTENCWMDLLGKLWRDGPWCSTKTSFLASTGCCQKQLGKGYPCS*LASGL-D 785
TTVH T+ K WR G S +STG K +GK P L L
Sbjct: 176 TTVHATTA-TQKTVDGPSKKDWRGGRGASANI-IPSSTGAA-KAVGKVIPA--LNGKLTG 230
Query: 786 LAFRVP 803
+AFRVP
Sbjct: 231 MAFRVP 236
Score = 88.2 bits (209), Expect = 1e-18
Identities = 41/65 (63%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Frame = +1
Query: 100 KIGINGFGRIGRLVLR-ASIEKGAQVVAINDPFIGLDYMVYLFKYDSTHGRFKAVLRFRM 276
K+GINGFGRIGR+VLR A + K QVVAINDPFI L+YM Y+FKYDSTHGRF + +
Sbjct: 5 KVGINGFGRIGRIVLRNALVAKTIQVVAINDPFIDLEYMAYMFKYDSTHGRFDGSVEIKD 64
Query: 277 DSLLL 291
L++
Sbjct: 65 GKLVI 69
>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 144 bits (349), Expect = 1e-35
Identities = 90/186 (48%), Positives = 110/186 (59%), Gaps = 1/186 (0%)
Frame = +3
Query: 249 F*GSVEVQDGFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGG 428
F GSVE + G LV++G+ I V +ERDP I W +GAEYV+ESTGVFTT + ASAHL+GG
Sbjct: 56 FEGSVETKGGKLVIDGHSIDVHNERDPANIKWSASGAEYVIESTGVFTTKETASAHLKGG 115
Query: 429 AKKVIISAPSADAPMFVVGVNLEAYDPLLRSSQMLLAPQTVLPHLQRLFMITLKLFEGLM 608
AK+VIISAPS DAPMFVVGVNLE ++P + L L ++ T + EGLM
Sbjct: 116 AKRVIISAPSKDAPMFVVGVNLEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLM 175
Query: 609 TTVHGHNCYTENCWMDLLGKLWRDGPWCSTKTSFLASTGCCQKQLGKGYPCS*LASGL-D 785
TTVH T+ K WR G S +STG K +GK P L L
Sbjct: 176 TTVHATTA-TQKTVDGPSKKDWRGGRGASANI-IPSSTGAA-KAVGKVIPA--LNGKLTG 230
Query: 786 LAFRVP 803
+AFRVP
Sbjct: 231 MAFRVP 236
Score = 88.6 bits (210), Expect = 1e-18
Identities = 41/65 (63%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Frame = +1
Query: 100 KIGINGFGRIGRLVLRASIEKGA-QVVAINDPFIGLDYMVYLFKYDSTHGRFKAVLRFRM 276
K+GINGFGRIGR+VLR +I G QVVA+NDPFI LDYM Y+FKYDSTHGRF+ + +
Sbjct: 5 KVGINGFGRIGRIVLRNAILTGKIQVVAVNDPFIDLDYMAYMFKYDSTHGRFEGSVETKG 64
Query: 277 DSLLL 291
L++
Sbjct: 65 GKLVI 69
>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 29.1 bits (62), Expect = 0.87
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Frame = +3
Query: 600 GLMTTVHGHNCYTENCW--MDLLGKLWRDGPWCSTKTS-FLASTGCCQKQLGKGYPCS*L 770
G++ + Y EN W +DLL + F STG C QLG + +
Sbjct: 304 GVLVGSASKSIYGENIWNPLDLLKSFLDHSNHHGVRAGVFFISTGLCLAQLGVNIAANTV 363
Query: 771 ASGLDLAFRVPGWLMVSVG*T*LSVLETC 857
++G D + P ++ + G S++ C
Sbjct: 364 SAGNDTSALCPMFINIRRGGYIASIIGIC 392
>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 29.1 bits (62), Expect = 0.87
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 714 PGMMFWLSTTGHHAIIFPEGPSNSFLCSSCG 622
P +FWLS +GH++ + P+ S L + CG
Sbjct: 458 PAGIFWLSWSGHYSYVNWVVPALSGLATGCG 488
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 714 PGMMFWLSTTGHHAIIFPEGPSNSFLCSSCG 622
P +FWLS +G+++ + P+ S L + CG
Sbjct: 457 PAGIFWLSWSGYYSYVHWIVPTLSGLATGCG 487
>SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +3
Query: 597 EGLMTTVHGHNCYTENCWMDLLGKLWRDGPWCSTK 701
E + T V HN E W D+L W G W S K
Sbjct: 91 EDMKTIVPIHNAVNERAWQDIL--QWEQG-WGSEK 122
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 820 PLVEPNCPSWKPASYECL 873
PLVE N P W+P + L
Sbjct: 917 PLVEANAPPWEPIDFSSL 934
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -3
Query: 464 ISTGS*YNNFFSTSLQVSRCFICSGKDTSRLYNIFSPSFSPWNGLRVPF*E-NGNFVTVN 288
+ +G +N +S + C +C G + ++ +P F +R+P NGN T+
Sbjct: 153 VCSGQGFNPKYSADKAIESCPVCGGSGFRVIEHMIAPGFR--QQMRMPCNACNGNGRTIK 210
Query: 287 NK 282
+K
Sbjct: 211 HK 212
>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 538
Score = 25.8 bits (54), Expect = 8.1
Identities = 21/70 (30%), Positives = 35/70 (50%)
Frame = -2
Query: 831 FNQRIPLANXGRGMPNPVRLPIKSRDNPYPTAFGSTQ*RPGMMFWLSTTGHHAIIFPEGP 652
+N+++ AN G+ +P RLP P GS P +FWL+ +G++ + P
Sbjct: 391 YNRKLD-ANGGKPVPE-ARLP--------PMMIGSVL-FPAGIFWLAWSGYYTHVHWIVP 439
Query: 651 SNSFLCSSCG 622
+ S L + CG
Sbjct: 440 TLSGLLTGCG 449
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 8.1
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -2
Query: 669 IFPEGPSNSFLCSSCG 622
++ GP NS LC++CG
Sbjct: 22 LWRRGPDNSLLCNACG 37
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,938,454
Number of Sequences: 5004
Number of extensions: 87530
Number of successful extensions: 255
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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