Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40131
         (877 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)             155   4e-38
SB_10790| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_20220| Best HMM Match : E-MAP-115 (HMM E-Value=2.1)                 29   6.5  
SB_28046| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score =  155 bits (376), Expect = 4e-38
 Identities = 90/185 (48%), Positives = 112/185 (60%)
 Frame = +3

Query: 249  F*GSVEVQDGFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGG 428
            F G+VE +DG LV+NG  ++VF+ +DP  IPWG+ GA+YVVESTGVFTT +KA  HL+GG
Sbjct: 829  FKGTVEAKDGKLVINGKPVSVFACKDPTQIPWGETGADYVVESTGVFTTLEKAGFHLKGG 888

Query: 429  AKKVIISAPSADAPMFVVGVNLEAYDPLLRSSQMLLAPQTVLPHLQRLFMITLKLFEGLM 608
            AKKVIISAPSADAPMFV+GVN E YDP +            L  L ++      L EGLM
Sbjct: 889  AKKVIISAPSADAPMFVMGVNHEKYDPSMTVVSNASCTTNCLAPLVKVINDNFGLEEGLM 948

Query: 609  TTVHGHNCYTENCWMDLLGKLWRDGPWCSTKTSFLASTGCCQKQLGKGYPCS*LASGLDL 788
            TT+H +   T+        K WRDG   + +    ASTG   K +GK  P         +
Sbjct: 949  TTIHAYTA-TQKTVDGPSAKNWRDGRG-AHQNVIPASTGAA-KAVGKVIP-EVNGKLTGM 1004

Query: 789  AFRVP 803
            AFRVP
Sbjct: 1005 AFRVP 1009



 Score = 36.3 bits (80), Expect = 0.033
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +1

Query: 214 VYLFKYDSTHGRFKAVLRFRMDSLLL 291
           VY+FKYDSTHGRFK  +  +   L++
Sbjct: 817 VYMFKYDSTHGRFKGTVEAKDGKLVI 842


>SB_10790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 368

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +2

Query: 56  SVIQQIFYNLPITCQKLESMDLAALAVWCSVLLLKRELKWS 178
           S+ + +FY   I+C+KL S+D+ AL  + S  LL   +K S
Sbjct: 24  SLPKTVFYCKEISCRKLRSIDMTALRDYISSSLLHGTMKTS 64


>SB_20220| Best HMM Match : E-MAP-115 (HMM E-Value=2.1)
          Length = 405

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -1

Query: 448 DIITFLAPPSK*ADALSVVVKTPVDSTTYSAPAFPHGMALGSLSE 314
           D+I  +A P + A A S    T V S +Y+  AFP G    S S+
Sbjct: 175 DVIERMAAPPRDAPATSTPCPTRVLSPSYALAAFPTGENASSSSQ 219


>SB_28046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 453

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +3

Query: 630 CYTENCWMDLLGKLWRDGPWCSTKTSFLASTGCCQKQLGKGYPCS*LASGLDLAFRVPGW 809
           C++  C   + G+ WR+  WC+      A   C ++Q  +G     +  G D   R   W
Sbjct: 301 CFSSECVGIVTGEPWRECGWCN---RLFAGDACYERQTEEG--AETVFKGGDCVDRFCQW 355

Query: 810 LM 815
           L+
Sbjct: 356 LL 357


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,707,485
Number of Sequences: 59808
Number of extensions: 661543
Number of successful extensions: 1842
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1841
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)