Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40130
         (680 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          25   0.43 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    24   1.3  
AF263515-1|AAF74207.1|  126|Tribolium castaneum cytochrome P450 ...    22   4.0  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    22   5.3  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   5.3  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    21   7.1  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 379 PVGVLHFDDLCIADCSTFT 323
           P GV HF+D+    CS FT
Sbjct: 295 PPGVEHFEDVVHKKCSNFT 313


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = -1

Query: 260 RPSV--ISFVIVRA-IFIVIPHTLINKLWFHFGSDS 162
           RPS+  IS  +  + IFI+IP TL +  +F  G +S
Sbjct: 486 RPSIYFISKTLAESPIFIIIPVTLTSVCYFMIGLNS 521


>AF263515-1|AAF74207.1|  126|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 138 IVTNSSFCRTRGTWLSSGIYAFSFSLVHFGEEEEF 34
           +VT + +   +GT L   IY   ++ V + E E+F
Sbjct: 73  MVTTTGYKLRKGTILQLHIYDLHYNPVIYPEPEKF 107


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 49  TKVDQRKRKCVDPTGKPGPSGSAKRR 126
           T+ D     CV P G   PS S + R
Sbjct: 8   TEEDSAPEACVSPEGSLLPSNSREMR 33


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 12/37 (32%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
 Frame = -2

Query: 385 GRPVGVLHFDDLCIADCSTFTSRNI-NISSCRAIKTS 278
           G P    HF       C +F  R   NISS    K +
Sbjct: 9   GEPAAGFHFGAFTCEGCKSFFGRTYNNISSISECKNN 45


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -1

Query: 554 GFLWVCSRQPFTKTSCHLAT*FFL--YIWS 471
           GFL VCS Q   KT  +L+  + +  YI+S
Sbjct: 26  GFLPVCSSQKGQKTCLNLSINYCICGYIFS 55


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,632
Number of Sequences: 336
Number of extensions: 3212
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)