Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40130
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    29   0.47 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    26   5.8  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   7.7  
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    25   7.7  

>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +2

Query: 251 RKDDSNMEMTGFDGSATGDVNISGGEGGAVGDAQ--VVKVKNTHGTT 385
           R  + N  +  F      +VN+ GG GG+V D    +   KN+H TT
Sbjct: 135 RSSNQNSSLKSFQSVPDSNVNVFGGFGGSVVDNNELLSTGKNSHQTT 181


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 281 GFDGSATGDVNISGGEGGAVGDAQVVKVKNTH 376
           G  G+  G    SGG GGA G A+V+   + H
Sbjct: 49  GRGGARGGRGGSSGGRGGAKGGAKVIIEPHRH 80


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +3

Query: 591 LNSSCSAHTF--TITYKVKISVSYTNKQKVPT 680
           L ++  +HTF  TIT     S+SYTN   +P+
Sbjct: 426 LTTTYDSHTFLTTITPSPSNSISYTNNTFIPS 457


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 270 ILESSFRN*FRHCSCHLHRHPTYSH*QTLVPFWERQHCSHLRL 142
           I +  F + FRH    LH HP + H  +++P        H++L
Sbjct: 64  IHKQKFEHQFRHGYWKLHPHPHHQH-DSIIPASWIHDTPHMKL 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,617,785
Number of Sequences: 5004
Number of extensions: 50556
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)