Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40130
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0520 - 16748646-16748741,16748821-16748895,16749260-167493...    29   2.6  
02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573...    29   3.4  
07_03_1662 + 28447419-28447666,28448429-28448573                       29   4.5  
03_05_1157 + 30816143-30816359,30817005-30817120                       28   6.0  
03_02_0963 - 12769715-12769859,12770639-12770889                       28   7.9  

>04_03_0520 -
           16748646-16748741,16748821-16748895,16749260-16749362,
           16749635-16749783,16750986-16751110,16751320-16751389
          Length = 205

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 139 TQTKMRTMLSLPKWNQSLLMRVCGMTMKMARTMT 240
           +Q K+   + LP  + SL +   G TMK+ART T
Sbjct: 169 SQQKVHVQIDLPSQSSSLSITKKGQTMKVARTNT 202


>02_03_0300 +
           17454622-17455402,17455535-17456977,17457015-17457317,
           17458429-17458519,17458623-17459757,17459998-17460077,
           17460449-17460533,17460614-17460705,17461079-17461147,
           17461227-17461263,17461351-17461433,17461695-17461840,
           17461868-17462138,17462245-17462281,17462428-17462721
          Length = 1648

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 52  KVDQRKRKCVDPTGKPGPSGSAKRRICDDTQTKMR 156
           KV  R RK V+P GKP   G  K++   D + K R
Sbjct: 683 KVWSRPRKEVEPVGKPKARGHPKKQAEPDEKPKAR 717


>07_03_1662 + 28447419-28447666,28448429-28448573
          Length = 130

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
 Frame = +2

Query: 257 DDSNMEMTGFDGSATGDVNISGGEGGAVGDAQVV---KVKNTHGTTLALFNGYTYYMTR- 424
           +D  ME+   +      + ++GG+ G +GD+  V   K K T  +  A    Y  Y+T+ 
Sbjct: 32  EDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKTKVTVTSDGAFSKRYLKYLTKK 91

Query: 425 --RSKNLSTWVCTNASRATR 478
             +  N+  W+   A+   R
Sbjct: 92  YLKKHNVRDWLRVIAANKDR 111


>03_05_1157 + 30816143-30816359,30817005-30817120
          Length = 110

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -1

Query: 218 IVIPHTLINKLWFHFGSDSIVLIFVW 141
           ++IPH  +NK  FH  S +++LIF+W
Sbjct: 85  LIIPHDTLNKGKFHKRS-NLLLIFLW 109


>03_02_0963 - 12769715-12769859,12770639-12770889
          Length = 131

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
 Frame = +2

Query: 257 DDSNMEMTGFDGSATGDVNISGGEGGAVGDAQVV---KVKNTHGTTLALFNGYTYYMTR- 424
           DD  ME+   +      + ++GG+ G +G++  V   K K T  +       Y  Y+T+ 
Sbjct: 33  DDKIMEIASLEKFLQERIKVAGGKAGNLGESVTVSRDKTKVTVTSDGPFSKRYLKYLTKK 92

Query: 425 --RSKNLSTWVCTNASRATR 478
             +  N+  W+   AS   R
Sbjct: 93  YLKKHNVRDWLRVIASNKDR 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,784,569
Number of Sequences: 37544
Number of extensions: 342784
Number of successful extensions: 1040
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)