Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40130
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31729| Best HMM Match : RVT_1 (HMM E-Value=0.023)                   30   1.5  
SB_46967| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-19)                 29   2.6  
SB_54737| Best HMM Match : Toxin_28 (HMM E-Value=8.6)                  29   2.6  
SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0)                      28   8.0  

>SB_31729| Best HMM Match : RVT_1 (HMM E-Value=0.023)
          Length = 423

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 64  RKRKCVDPTGKPGPSGSAKRRICDDTQTKMRTMLSLP-KWNQSLLMRVCG 210
           R +  VDP  +   +GS K R C D    +R +L    +WN +L +   G
Sbjct: 126 RMKDAVDPHLRDQQAGSRKERSCTDQIATLRIILEQSLEWNSTLYVNFIG 175


>SB_46967| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-19)
          Length = 341

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -1

Query: 239 VIVRAIFIVIPHTLINKLWFHFGSDSIVLIFVWVSSQIRLFAE 111
           V+    +I+I H +  KLW      SIVL  VWV S    F +
Sbjct: 122 VVTLERYIMIVHAMKYKLWITKKRTSIVLTSVWVFSAATSFIQ 164


>SB_54737| Best HMM Match : Toxin_28 (HMM E-Value=8.6)
          Length = 155

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +2

Query: 332 GAVGDAQVVKVKNTHGTTLALFNGYTYY--MTRRSKNLSTWVCTNASRATRCKG 487
           G  GDAQ  +++  H T   L N  TYY  + ++ K    + C       RC+G
Sbjct: 74  GIGGDAQSFRLQVIHDTQAVLDNEITYYRQVRKKYKLFRRYPCCVCGIRHRCRG 127


>SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 734

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +1

Query: 25  HQNKLFFLTKVDQRKRKCVDPTGKPGPSGSAKRRICDDTQTKMRTMLSLPK 177
           H+N  F   KVD  K   +  +GKP PS S   +I      K +  +S PK
Sbjct: 242 HKNSSFTAEKVDMTKPALL-VSGKPQPSASPSDKITKVGCGKTKACVSEPK 291


>SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6116

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 308  VNISGGEGGAVGDAQVVKVKNTHGTTLALFNGYTYYMTRRSKNLS 442
            V +S G GG V  +  +KV+N +     +F G T Y T   +NLS
Sbjct: 2166 VRVSDGRGGTVSTSLTIKVQNQNDP--PVFRG-TPYTTSIDENLS 2207


>SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0)
          Length = 1264

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +3

Query: 114 CKKTNL*RYP--DEDENNAVAPKMEP 185
           C ++NL  YP  DEDE+ A AP+  P
Sbjct: 797 CVRSNLIDYPEDDEDEDTAKAPRRNP 822


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,563,163
Number of Sequences: 59808
Number of extensions: 393324
Number of successful extensions: 1175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)