Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40130
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53342-5|AAA96217.1|  178|Caenorhabditis elegans Hypothetical pr...    31   0.76 
AL032634-1|CAC35856.2| 1195|Caenorhabditis elegans Hypothetical ...    30   1.8  
U50191-3|AAK31557.1|  380|Caenorhabditis elegans Dumpy : shorter...    29   2.3  
L12706-1|AAA17398.2|  360|Caenorhabditis elegans collagen protein.     29   2.3  
AF016449-4|AAG23998.3|  330|Caenorhabditis elegans Serpentine re...    29   2.3  
AC006794-2|AAK68505.2|  622|Caenorhabditis elegans Hypothetical ...    29   3.1  
AC006608-11|AAF39761.1|  360|Caenorhabditis elegans Hypothetical...    29   3.1  
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    29   4.1  
U10401-2|AAA19057.2|  386|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>U53342-5|AAA96217.1|  178|Caenorhabditis elegans Hypothetical
           protein F01G12.1 protein.
          Length = 178

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -1

Query: 206 HTLINKLWFHFGSDSIVLIFVWVSSQIRLFAEPEGPGF 93
           HT+  K+WFH+G D +VL   W        A   G GF
Sbjct: 116 HTM--KMWFHWGFDEVVLFDFWRIDDKNALAVILGAGF 151


>AL032634-1|CAC35856.2| 1195|Caenorhabditis elegans Hypothetical
           protein Y39G8C.1 protein.
          Length = 1195

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +2

Query: 407 TYYMTRRSKNLSTWVCTNASRATRCKGKIMLLN 505
           TY+MTR  + L  W+ T ++  +R +G+ ++L+
Sbjct: 137 TYFMTRLHQKLDDWIKTKSATDSRWQGRKIILS 169


>U50191-3|AAK31557.1|  380|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 2 protein.
          Length = 380

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 85  PTGKPGPSGSAKRRICDDTQTKM 153
           PTG+ GPSG+    +C DT+  M
Sbjct: 290 PTGEQGPSGTPGTCVCQDTEVVM 312


>L12706-1|AAA17398.2|  360|Caenorhabditis elegans collagen protein.
          Length = 360

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 85  PTGKPGPSGSAKRRICDDTQTKM 153
           PTG+ GPSG+    +C DT+  M
Sbjct: 290 PTGEQGPSGTPGTCVCQDTEVVM 312


>AF016449-4|AAG23998.3|  330|Caenorhabditis elegans Serpentine
           receptor, class t protein16 protein.
          Length = 330

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +1

Query: 124 RICD-DTQTKMRTMLSLPKWNQSLLMRVCGMTMKMARTMTK 243
           R+CD D+Q+K++ M     W   +L+ +CG+   +A  +TK
Sbjct: 147 RVCDVDSQSKLKKMFD--GWRIYVLLAICGVYFFVATFLTK 185


>AC006794-2|AAK68505.2|  622|Caenorhabditis elegans Hypothetical
           protein Y50D4A.4 protein.
          Length = 622

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = -3

Query: 165 QHCSHLRLGIVTNSSFCRTRGTWLSSGIYAFSFSLVHFGEEEEFILMLIGMAYL 4
           Q CS+L+  +VT+S F R +G  +  G    S S  +F E++  I  + G  Y+
Sbjct: 136 QSCSYLQPFVVTHSQFTRMKGFEVDFG---GSISKENFLEKDAAIATIYGRVYV 186


>AC006608-11|AAF39761.1|  360|Caenorhabditis elegans Hypothetical
           protein C15F1.1 protein.
          Length = 360

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +1

Query: 13  HSN*HQNKLFFLTKVDQRKRKCVDPTGKPGPSGSAKRRICDDTQTKMRTM 162
           H N ++  L +  K + ++++C   TGK     SA+R + DD +T  R +
Sbjct: 53  HPNSNKFNLKWKKKKETQRKQCSISTGKDRFRFSARRSLIDDVETFQRNV 102


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
            protein F41G3.12 protein.
          Length = 1483

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -3

Query: 165  QHCSHLRLGIVTNSSFCRTRGTWLSS----GIYAFSFSLVHFGEEEEFILM 25
            Q C+   LGIV N + C + GT  S+     ++A +  L  F  + EF++M
Sbjct: 865  QSCNMNHLGIVANMTVCGSDGTTYSNLCELKMFACNIKLTLFQFQWEFVMM 915


>U10401-2|AAA19057.2|  386|Caenorhabditis elegans Hypothetical
           protein T20B12.4 protein.
          Length = 386

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 157 FSSSSGYRHKFVFLQNQRDLAFQW 86
           FS  SGYR + VF Q + D+  +W
Sbjct: 101 FSQFSGYRFEVVFWQVEEDVHIRW 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,598,069
Number of Sequences: 27780
Number of extensions: 297238
Number of successful extensions: 795
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)