Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40127
         (444 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165...    83   1e-16
02_02_0153 - 7258002-7258034,7258137-7258223,7258991-7259161,725...    75   3e-14
01_06_0550 - 30151494-30151526,30151620-30151706,30152458-301526...    72   2e-13
01_05_0740 - 24809951-24810394,24810622-24810700,24811651-248118...    27   5.1  
07_01_0027 - 195879-196093,196242-196278,196985-197041,197519-19...    27   6.8  
06_03_0671 + 23348958-23349101,23349475-23349834,23350003-233503...    27   6.8  
11_06_0081 + 19886848-19888050,19888243-19888896                       27   9.0  
11_04_0350 - 16658497-16659015                                         27   9.0  
09_03_0108 + 12421719-12421749,12422794-12422892,12423370-12423890     27   9.0  
04_04_0596 - 26497863-26497913,26498010-26498081,26499015-264990...    27   9.0  
04_03_0810 - 19902049-19902069,19902195-19902400,19902523-199025...    27   9.0  
02_05_1305 - 35586499-35586601,35586963-35587034,35587111-355872...    27   9.0  
02_01_0120 + 884467-887649                                             27   9.0  

>06_03_0440 +
           20815528-20815653,20815742-20815912,20816501-20816584,
           20818831-20818917,20819044-20819076
          Length = 166

 Score = 82.6 bits (195), Expect = 1e-16
 Identities = 37/61 (60%), Positives = 49/61 (80%), Gaps = 1/61 (1%)
 Frame = +1

Query: 79  VCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNFGGGKSTGFALIYDTLDLA 255
           V +VLHPG+  VSK +++EKLAK+Y+V   + +FVF F+T+FGGGKSTGF LIYD LD A
Sbjct: 29  VLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHFGGGKSTGFGLIYDNLDAA 88

Query: 256 R 258
           +
Sbjct: 89  K 89



 Score = 43.2 bits (97), Expect(2) = 1e-09
 Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
 Frame = +3

Query: 24  TIRTRKFMTNRLLARKQHGLRCFTSRKTN-RQQDRDP*EARQNVQGYSRCSVRIRFQDKL 200
           T+RTRKFMTNRLL+RKQ  L      + N  + D     A+      S C    +F+   
Sbjct: 11  TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70

Query: 201 RRWQVNWIRFDLRHTRSGKKFEPKHRLAR 287
              +         +  + KK+EPK+RL R
Sbjct: 71  GGGKSTGFGLIYDNLDAAKKYEPKYRLIR 99



 Score = 35.9 bits (79), Expect(2) = 1e-09
 Identities = 16/26 (61%), Positives = 19/26 (73%)
 Frame = +3

Query: 288 HGLYEKKRPTRKQRKERKNRMKKVRG 365
           +GL  K   +RKQ KERKNR KK+RG
Sbjct: 128 NGLATKVEKSRKQMKERKNRAKKIRG 153


>02_02_0153 -
           7258002-7258034,7258137-7258223,7258991-7259161,
           7259261-7259386
          Length = 138

 Score = 74.9 bits (176), Expect = 3e-14
 Identities = 46/115 (40%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
 Frame = +3

Query: 24  TIRTRKFMTNRLLARKQHGLRCFTSRKTN-RQQDRDP*EARQNVQGYSRCSVRIRFQDKL 200
           T+RTRKFMTNRLL+RKQ  L      + N  + D     A+      S C    +F+   
Sbjct: 11  TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70

Query: 201 RRWQVNWIRFDLRHTRSGKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 365
              +         +  + KK+EPK+RL R+GL  K   +RKQ KERKNR KK+RG
Sbjct: 71  GGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRG 125


>01_06_0550 -
           30151494-30151526,30151620-30151706,30152458-30152628,
           30152716-30152757,30152856-30152939
          Length = 138

 Score = 72.1 bits (169), Expect = 2e-13
 Identities = 44/116 (37%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
 Frame = +3

Query: 24  TIRTRKFMTNRLLARKQHGLRCFTSRKTN--RQQDRDP*EARQNVQGYSRCSVRIRFQDK 197
           T+RTRKFMTNRLL+RKQ  L      + N  + + ++       V+  + C    +F+  
Sbjct: 11  TLRTRKFMTNRLLSRKQFVLEVIHPGRPNVSKAELKEKLAKLYEVKD-ANCIFVFKFRTH 69

Query: 198 LRRWQVNWIRFDLRHTRSGKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 365
               +         +  + KK+EPK+RL R+GL  K   +RKQ KERKNR KK+RG
Sbjct: 70  FGGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRG 125


>01_05_0740 - 24809951-24810394,24810622-24810700,24811651-24811809,
            24812083-24812246,24812436-24812624,24813151-24813408,
            24813463-24813951,24814062-24814262,24814368-24814639,
            24814661-24814685,24814776-24814937,24815065-24815104,
            24815244-24815353,24815812-24815898,24816013-24816507
          Length = 1057

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 291  GLYEKKRPTRKQRKERKNRMKK 356
            G+YE++R  R+Q KER+ +  K
Sbjct: 999  GVYERERNMRQQEKERRKQQSK 1020


>07_01_0027 -
           195879-196093,196242-196278,196985-197041,197519-197680,
           198653-198760
          Length = 192

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 248 IWQEVRAQAQVSPPRPVREEEAHAQTA 328
           +W+     A   PP+P++EEEA A+ A
Sbjct: 19  LWRRRSDAAHRLPPQPLQEEEARARKA 45


>06_03_0671 +
           23348958-23349101,23349475-23349834,23350003-23350302,
           23350399-23350488,23353290-23353766
          Length = 456

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +3

Query: 231 DLRHTRSGKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMK 353
           +LRH++S        R+A     + ++ T++QRK++K + K
Sbjct: 358 ELRHSKSVGSIGMMRRVAADDGDDSEKTTKQQRKKKKKKKK 398


>11_06_0081 + 19886848-19888050,19888243-19888896
          Length = 618

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -2

Query: 254 ARSSVS*IKANPVDLPPPKFVLKPNTNTTSGVTLYILASFSRISVLLTV 108
           ++  VS +++ P   PPP     P TN  +   +Y+    + ++VL  V
Sbjct: 252 SKPDVSQLRSPPPPPPPPPAAPAPTTNRKNHTGVYVGIGAAAVAVLAVV 300


>11_04_0350 - 16658497-16659015
          Length = 172

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 300 EKKRPTRKQRKERKNRMKKVRGT 368
           +KK+  +K++K++K + KKVR T
Sbjct: 36  KKKKKKKKKKKKKKKKKKKVRYT 58


>09_03_0108 + 12421719-12421749,12422794-12422892,12423370-12423890
          Length = 216

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +3

Query: 159 YSRCSVRIR-FQDKLRRWQVNWI 224
           + RC VR+  F  KLR W ++W+
Sbjct: 134 FLRCVVRVNNFPTKLRPWDLSWL 156


>04_04_0596 -
           26497863-26497913,26498010-26498081,26499015-26499093,
           26499440-26499553,26499822-26499871,26500353-26500398,
           26501100-26501719
          Length = 343

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 237 RHTRSGKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 362
           R  R  ++ E + R  R     +KR  +++ +ERK + KK R
Sbjct: 136 RRRRRKEREEEERRRRRKDKERRKRKEKERERERKKKEKKKR 177


>04_03_0810 -
           19902049-19902069,19902195-19902400,19902523-19902559,
           19902623-19902675,19903149-19903226,19903496-19903586,
           19903773-19903917,19903988-19904227,19904313-19904523,
           19904788-19905232
          Length = 508

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +3

Query: 156 GYSRCSVRIRFQDKLRRWQVNWIRFDLRHTRSGKKFEPKHRLARHGLYEKKRPTRKQRK 332
           G  R S  ++    L+R Q+N +  D  +     KF PK  +    +   KR  +K+ K
Sbjct: 265 GDFRASKSMQLYPLLQRGQINLLYLDTTYCNPKYKFPPKEDVIDFAVRTAKRYLQKEPK 323


>02_05_1305 -
           35586499-35586601,35586963-35587034,35587111-35587232,
           35587767-35587826,35587919-35587997,35588219-35588307,
           35588405-35588492,35591761-35591821,35592546-35592890,
           35593094-35594351
          Length = 758

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +1

Query: 55  DCWRASSMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDV 171
           DC   +++ C  L  GKP  +   + E   K   +TP +
Sbjct: 494 DCLVYATLACAYLTAGKPVAALDILNEMAKKQLYITPQI 532


>02_01_0120 + 884467-887649
          Length = 1060

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 312 ASSSRTGRGGLTCAWARTSC 253
           ASSS T  GG  CAW   +C
Sbjct: 59  ASSSSTSDGGDCCAWRGVAC 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,794,413
Number of Sequences: 37544
Number of extensions: 266305
Number of successful extensions: 786
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)