Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40127
(444 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46881| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.43
SB_58730| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.75
SB_55678| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.75
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032) 30 0.75
SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.99
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4) 29 1.7
SB_6351| Best HMM Match : IncA (HMM E-Value=0.13) 29 1.7
SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20) 28 4.0
SB_7527| Best HMM Match : DSL (HMM E-Value=2.5e-34) 28 4.0
SB_47629| Best HMM Match : Vicilin_N (HMM E-Value=1.1) 28 4.0
SB_16395| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_2602| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_35552| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31) 27 7.0
SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0) 27 7.0
SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17) 27 9.2
SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45) 27 9.2
SB_36607| Best HMM Match : Vicilin_N (HMM E-Value=3.7) 27 9.2
SB_23704| Best HMM Match : Utp14 (HMM E-Value=2.1e-10) 27 9.2
SB_12543| Best HMM Match : TSP_1 (HMM E-Value=1.4e-07) 27 9.2
SB_7408| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_46881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 278
Score = 31.1 bits (67), Expect = 0.43
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +3
Query: 138 ARQNVQGYSRCSVRIRFQDKLRRWQVNWIRFDLRHTRSGKKFEPKHRLARHGLYEKK-RP 314
AR +VQ R + ++ R +V +R + R R G+K K R R G E+K R
Sbjct: 32 ARTSVQNRQRNQAE--YSERKER-KVRKVRKE-RKVRKGRKVR-KGRKVRKGRKERKGRK 86
Query: 315 TRKQRKERKNR 347
RK RKERK R
Sbjct: 87 VRKVRKERKGR 97
>SB_58730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1014
Score = 30.3 bits (65), Expect = 0.75
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +3
Query: 162 SRCSVRIRFQDKLRRWQVNWIRFDLRHTRSGKKFEPKHRLARHGLYEKKRPTR 320
+R V F + VN+ D+ +T G K E RLAR L+ K+ +R
Sbjct: 36 TRAKVMFTFTEHFTHEDVNYAIDDIEYTEGGTKTELALRLARTELFSKQGGSR 88
>SB_55678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 30.3 bits (65), Expect = 0.75
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 237 RHTRSGKKFEPKHRLARHGLYEKK-RPTRKQRKERKNR 347
R R G+K K R R G E+K R RK RKERK R
Sbjct: 21 RKVRKGRKVR-KGRKVRKGRKERKGRKVRKVRKERKGR 57
>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
Length = 2565
Score = 30.3 bits (65), Expect = 0.75
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +3
Query: 183 RFQDKLRRWQVNWIRFDLRHTRSGKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 362
R + +LRR W R +R R K+ + R R ++R R++ + R+ R +KVR
Sbjct: 665 RKRQRLRRRLTGW-RRRIRRQRRRKRRRKRRRQRRSRRRRRRRRRRRRSQLRRKRRRKVR 723
Score = 29.1 bits (62), Expect = 1.7
Identities = 27/102 (26%), Positives = 43/102 (42%)
Frame = +3
Query: 36 RKFMTNRLLARKQHGLRCFTSRKTNRQQDRDP*EARQNVQGYSRCSVRIRFQDKLRRWQV 215
R+F+ R R+Q R R+ RQ+ R R+N + R R R + +R ++
Sbjct: 473 RRFLVRRRPIRRQRRRRRRRRRRRRRQRRRRRRRRRRNRRKRRR---RKRRTARRKRREL 529
Query: 216 NWIRFDLRHTRSGKKFEPKHRLARHGLYEKKRPTRKQRKERK 341
R ++ R G R R G + R R+ R+ RK
Sbjct: 530 RRRRLRMKRGRRGGSRNRGLRRGRRGRKRRPRLGRRNRRLRK 571
>SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1299
Score = 29.9 bits (64), Expect = 0.99
Identities = 27/109 (24%), Positives = 48/109 (44%)
Frame = +3
Query: 30 RTRKFMTNRLLARKQHGLRCFTSRKTNRQQDRDP*EARQNVQGYSRCSVRIRFQDKLRRW 209
R R+ R RK+ R RK R++ R R+ + R R R + + RR
Sbjct: 1052 RKRRRKRKRRRKRKRRRKRK-RRRKRQRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRR 1110
Query: 210 QVNWIRFDLRHTRSGKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 356
+ R R + ++ + K R R ++KR ++QR+ ++ R +K
Sbjct: 1111 KRKRRRKRQRRRKRKRRRKRKRRRKRQRRRKRKRRRKRQRRRKRQRRRK 1159
Score = 29.1 bits (62), Expect = 1.7
Identities = 24/113 (21%), Positives = 50/113 (44%)
Frame = +3
Query: 18 TATIRTRKFMTNRLLARKQHGLRCFTSRKTNRQQDRDP*EARQNVQGYSRCSVRIRFQDK 197
T +RT + + +++ + RK R++ R R+ + R R R + +
Sbjct: 1017 THALRTYRHAGSHERRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKR 1076
Query: 198 LRRWQVNWIRFDLRHTRSGKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 356
RR + R R + ++ + K R R ++KR ++QR+ ++ R +K
Sbjct: 1077 QRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKRRRKRQRRRKRKRRRK 1129
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 237 RHTRSGKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMK 353
RH+RS +HR H EKK+ +K++KE+ + K
Sbjct: 268 RHSRSRSPTHRRHRSRSHS-PEKKKHKKKEKKEKDEKRK 305
>SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4)
Length = 166
Score = 29.1 bits (62), Expect = 1.7
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 270 KHRLARHGLYEKKRPTRKQRKERKNRMKKVR 362
+H LA H +++RP+ R+ K R++K+R
Sbjct: 79 RHGLASHDKKKRERPSLVARERMKKRLRKIR 109
>SB_6351| Best HMM Match : IncA (HMM E-Value=0.13)
Length = 417
Score = 29.1 bits (62), Expect = 1.7
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 270 KHRLARHGLYEKKRPTRKQRKERKNRMKKVR 362
+H LA H +++RP+ R+ K R++K+R
Sbjct: 378 RHGLASHDKKKRERPSLVARERMKKRLRKIR 408
>SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20)
Length = 1468
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = -2
Query: 197 FVLKPNTNTTSGVTL---YILASFSRISVLLTVGFPGCKTSQT 78
F+ PN ++ TL ++ S R+ V+ +VG PGC S T
Sbjct: 904 FISIPNITISNTFTLSWWMLVQSVQRVYVMTSVGNPGCGASPT 946
>SB_7527| Best HMM Match : DSL (HMM E-Value=2.5e-34)
Length = 542
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/72 (22%), Positives = 29/72 (40%)
Frame = -1
Query: 372 SWYRGPSSFCSYVLYAVCAWASSSRTGRGGLTCAWARTSCQIECVVDQSESS*LATSEVC 193
+WY CS +A +S TG G W C C+ +++ + SE
Sbjct: 337 NWY---GKDCSKYCAPTGNFACNSLTGERGCVAGWYGDQCDRYCIATHDDTAAFSCSETG 393
Query: 192 LETEYEHYIGSN 157
+ ++ + G+N
Sbjct: 394 EKVCHKGWYGTN 405
>SB_47629| Best HMM Match : Vicilin_N (HMM E-Value=1.1)
Length = 599
Score = 27.9 bits (59), Expect = 4.0
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +3
Query: 171 SVRIRFQDKLRRWQVNWIRFDLRHTRSGKKFEPKHRLARHGLYEKKRPTRKQR-KERKNR 347
S+ R+ K R+ R R + +K E K + E+K+ +K+R KERK
Sbjct: 16 SIDGRWSSKTRKGGKRDEREQEREKKERRKKERKKERKKERKKERKKEKKKERKKERKEE 75
Query: 348 MKKVR 362
KK R
Sbjct: 76 RKKER 80
>SB_16395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 61
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 267 PKHRLARHGLYEKKRPTRKQRKERKNRMKK 356
P+ L H L ++ R R+QR ER++R+K+
Sbjct: 21 PQQILFTHRLEQRYRVERRQRLERRHRVKR 50
>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +3
Query: 237 RHTRSGKKFEPKHRL--ARHGLYEKKRPTRKQRKERKNRMKK 356
+H R K+ KHRL R + K++ RK K ++ +K
Sbjct: 207 KHKRKRKRESAKHRLKRKRESVKHKRKQKRKSAKHKRKHKRK 248
>SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1576
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 234 LRHTRSGKKFEPKHRLARHGLYEKKRPTRKQ 326
+ H R+GKK E K LA G+ PT KQ
Sbjct: 210 IAHVRTGKKKEGKSPLALAGIPTHNTPTFKQ 240
>SB_2602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 273
Score = 27.1 bits (57), Expect = 7.0
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +2
Query: 14 RNSDYSHSQVHDQQIVGAQAAWFAMFYIQENQ 109
R + +SH H + + A+ WF +F+ + Q
Sbjct: 219 RTAMWSHEMSHKKSAIDAEKDWFEIFFCEYGQ 250
>SB_35552| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1044
Score = 27.1 bits (57), Expect = 7.0
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = -2
Query: 377 RFLGTADLLHSVLTFFTLFA-RGPLLLVQAVAG*PVLGLELLARSSVS*IKANPVDLPPP 201
RFL L + +L FT FA R + + +G + + +S S + NP + P
Sbjct: 721 RFLNLEPLDYDLLKSFTEFAARANETYGETTSSSETMGSSIPSSNSQS-QRENPSVIEVP 779
Query: 200 KFVLKPNTNTTSGVT 156
+ + P T T+G T
Sbjct: 780 RAIANPRTGETTGST 794
>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
Length = 690
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 246 RSGKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 365
R+ ++ K R+A + + P +KQ+KE+ R KK +G
Sbjct: 454 RNPRRVSKKKRVAEP--IKSRSPAKKQKKEKVPRKKKAKG 491
>SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
Length = 1127
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 258 KFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 362
KFEPKH+ + KKR +RK+ E + + + +R
Sbjct: 1060 KFEPKHK-KKGRSSSKKRHSRKKGHEEQQKKETIR 1093
>SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)
Length = 1249
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 255 KKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKV 359
+K + + RLA E+KR ++RKE++ + K++
Sbjct: 202 RKLQEEARLAAQRALEEKRKLEEERKEQERKEKEL 236
>SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 26.6 bits (56), Expect = 9.2
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 300 EKKRPTRKQRKERKNRMKK 356
EKKR +KQ+K++K + KK
Sbjct: 16 EKKRKKKKQKKKKKKKKKK 34
>SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)
Length = 1102
Score = 26.6 bits (56), Expect = 9.2
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +3
Query: 168 CSV-RIRFQDKLRRWQVNWIRFDLRHTRSGKKFEPKHRLARHGLYEKKRPTRKQRKERKN 344
CS+ RI F ++R N+ +R KK + K + + +KK+ +K++K++KN
Sbjct: 342 CSIKRIPFGCSIKRTPFNFGELRIRKPVRSKKKKKKKKKKK----KKKKKKKKKKKKKKN 397
Query: 345 RMK 353
++
Sbjct: 398 SVE 400
>SB_36607| Best HMM Match : Vicilin_N (HMM E-Value=3.7)
Length = 567
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 63 ARKQHGLRCFTSRKTNRQQDRDP*EARQNVQGYSRCSVRIRFQDK 197
ARK+ S KTN+QQD+D AR + + + QDK
Sbjct: 319 ARKRQARTSQASPKTNKQQDQDKQAARPRQASRKTKTSKPQDQDK 363
>SB_23704| Best HMM Match : Utp14 (HMM E-Value=2.1e-10)
Length = 574
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 243 TRSGKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGT 368
T+ GKK K KKR +K++K++K K+ T
Sbjct: 370 TKRGKKKTSKDATEESEAPNKKRKEKKKKKKKKKASSKIEPT 411
>SB_12543| Best HMM Match : TSP_1 (HMM E-Value=1.4e-07)
Length = 379
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -1
Query: 372 SWYRGPSSFCSYVLYAVCAWASSSRTGRGGLTCAWARTSC 253
S +R P F L+ W S + TG TC +A +C
Sbjct: 190 SVFRNPQCFMGMELFIAFRWVSGTATGS---TCQYAIVTC 226
>SB_7408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 26.6 bits (56), Expect = 9.2
Identities = 18/82 (21%), Positives = 39/82 (47%)
Frame = +3
Query: 111 RQQDRDP*EARQNVQGYSRCSVRIRFQDKLRRWQVNWIRFDLRHTRSGKKFEPKHRLARH 290
RQ+ R RQ + R R R + + R+ Q R RH + ++ + + + R
Sbjct: 5 RQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRHRQRQRQRQRQRQRQRQ 64
Query: 291 GLYEKKRPTRKQRKERKNRMKK 356
+++R ++QR+ ++ R ++
Sbjct: 65 RQRQRQRQRQRQRQRQRQRQRQ 86
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,628,980
Number of Sequences: 59808
Number of extensions: 303235
Number of successful extensions: 925
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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