Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40127
         (444 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   0.65 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   3.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   6.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   8.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   8.0  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.2 bits (50), Expect = 0.65
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 106 VFLDVKHRKPCCLRANNLLVMNLRVRIVAVPSLIL 2
           VFL  K R+PC     +L V +L V ++ +P  +L
Sbjct: 66  VFLVRKLRRPCNYLLVSLAVSDLCVALLVMPMALL 100


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 190 KTNFGGGKSTGFALIYDTLDLA 255
           KTN  G  S+G  L+ +  D+A
Sbjct: 724 KTNLSGDSSSGTTLLLELDDIA 745


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = -1

Query: 288 GGLTCAWARTSCQIECVVDQSE 223
           GGL   W+R   ++   ++++E
Sbjct: 384 GGLEAQWSRVLGRVHATIERNE 405


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 88  VLHPGKPTVSKTEIREK 138
           +LHP + T  K   REK
Sbjct: 15  LLHPSRCTQGKVNYREK 31


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 88  VLHPGKPTVSKTEIREK 138
           +LHP + T  K   REK
Sbjct: 15  LLHPSRCTQGKVNYREK 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,521
Number of Sequences: 438
Number of extensions: 2725
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)