Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40127
(444 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) simi... 86 9e-18
At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S ... 83 1e-16
At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family ... 30 0.61
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s... 29 1.1
At5g26850.1 68418.m03203 expressed protein 28 2.5
At3g23620.1 68416.m02971 brix domain-containing protein contains... 28 3.3
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ... 27 4.3
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ... 27 4.3
At2g07715.1 68415.m00965 ribosomal protein L2, putative similar ... 27 7.5
At1g11100.1 68414.m01271 SNF2 domain-containing protein / helica... 27 7.5
At5g51590.1 68418.m06396 DNA-binding protein-related contains Pf... 26 10.0
At3g27880.1 68416.m03476 expressed protein 26 10.0
At2g34380.1 68415.m04209 expressed protein 26 10.0
>At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) similar
to ribosomal protein S19 GB:445612 [Solanum tuberosum]
and similar to ribosomal protein S24 GB:4506703 [Homo
sapiens]
Length = 133
Score = 86.2 bits (204), Expect = 9e-18
Identities = 38/61 (62%), Positives = 51/61 (83%), Gaps = 1/61 (1%)
Frame = +1
Query: 79 VCDVLHPGKPTVSKTEIREKLAKMYKVT-PDVVFVFGFKTNFGGGKSTGFALIYDTLDLA 255
V DVLHPG+ VSK E++EKLA+MY+V P+ +FVF F+T+FGGGKS+GF LIYDT++ A
Sbjct: 25 VIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSSGFGLIYDTVESA 84
Query: 256 R 258
+
Sbjct: 85 K 85
Score = 74.5 bits (175), Expect = 3e-14
Identities = 48/122 (39%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Frame = +3
Query: 6 MSEGTATIRTRKFMTNRLLARKQHGLRCFTSRKTN--RQQDRDP*EARQNVQGYSRCSVR 179
M+E TIRTRKFMTNRLL+RKQ + + N + + ++ V+ + V
Sbjct: 1 MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFV- 59
Query: 180 IRFQDKLRRWQVNWIRFDLRHTRSGKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKV 359
+F+ + + S KKFEPK+RL R+GL K +RKQ KERKNR KK+
Sbjct: 60 FKFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKI 119
Query: 360 RG 365
RG
Sbjct: 120 RG 121
>At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S
ribosomal protein S19, Cyanophora paradoxa,
EMBL:CPA245654
Length = 133
Score = 82.6 bits (195), Expect = 1e-16
Identities = 36/61 (59%), Positives = 50/61 (81%), Gaps = 1/61 (1%)
Frame = +1
Query: 79 VCDVLHPGKPTVSKTEIREKLAKMYKVT-PDVVFVFGFKTNFGGGKSTGFALIYDTLDLA 255
V DVLHPG+ VSK E++EKLA+MY+V P+ +F F F+T+FGGGKS+G+ LIYDT++ A
Sbjct: 25 VIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCFKFRTHFGGGKSSGYGLIYDTVENA 84
Query: 256 R 258
+
Sbjct: 85 K 85
Score = 71.3 bits (167), Expect = 3e-13
Identities = 47/121 (38%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Frame = +3
Query: 6 MSEGTATIRTRKFMTNRLLARKQHGLRCFTSRKTN-RQQDRDP*EARQNVQGYSRCSVRI 182
M+E TIRTR FMTNRLLARKQ + + N + + AR
Sbjct: 1 MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60
Query: 183 RFQDKLRRWQVNWIRFDLRHTRSGKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 362
+F+ + + + KKFEPK+RL R+GL K +RKQ KERKNR KK+R
Sbjct: 61 KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120
Query: 363 G 365
G
Sbjct: 121 G 121
>At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family
protein / snRNP family protein contains similarity to
U4/U6 small nuclear ribonucleoprotein hPrp3 [Homo
sapiens] gi|2708307|gb|AAC51926
Length = 786
Score = 30.3 bits (65), Expect = 0.61
Identities = 24/81 (29%), Positives = 39/81 (48%)
Frame = +3
Query: 99 RKTNRQQDRDP*EARQNVQGYSRCSVRIRFQDKLRRWQVNWIRFDLRHTRSGKKFEPKHR 278
R+ R++DRD R++ Y R S R +D+ R + R R R G + KH
Sbjct: 26 REGGRRRDRDVDSKRRDSDHY-RSSRRGDREDERDRTKDRRGRSVERGEREGSRDREKHH 84
Query: 279 LARHGLYEKKRPTRKQRKERK 341
R K++ +R +RK+R+
Sbjct: 85 HERSHEGSKEKESRSKRKDRE 105
>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
similarity to flagelliform silk protein [Nephila
clavipes] gi|7106224|gb|AAF36090
Length = 1504
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 166 DVVFVFGFKTNFGGGKSTGFALIYDT 243
DV FV GF T+F G GFA+ + T
Sbjct: 251 DVGFVVGFVTSFAAGLDVGFAIDFAT 276
Score = 27.9 bits (59), Expect = 3.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 175 FVFGFKTNFGGGKSTGFALIYDT 243
FV GF T+F G TGF + +DT
Sbjct: 110 FVTGFATDFDVGFDTGFTIGFDT 132
>At5g26850.1 68418.m03203 expressed protein
Length = 919
Score = 28.3 bits (60), Expect = 2.5
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +1
Query: 67 ASSMVCDVLHPGKPTVSKTEIRE-KLAKMYKVTPDVVFVFGFKTN 198
+++++ D++ P +SK E + K+ + + TPD F+FG + N
Sbjct: 709 SNTIITDIVAKNLPKLSKLEEADVKMQILEQFTPDDAFMFGSRPN 753
>At3g23620.1 68416.m02971 brix domain-containing protein contains
Pfam domain, PF04427: Brix domain
Length = 314
Score = 27.9 bits (59), Expect = 3.3
Identities = 10/37 (27%), Positives = 24/37 (64%)
Frame = +3
Query: 246 RSGKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 356
++GK + P +L L++K + ++++RK+ K + K+
Sbjct: 266 KTGKIYMPDQKLKEMKLFDKSKGSKRERKDAKLKHKE 302
>At2g28290.2 68415.m03434 chromatin remodeling protein, putative
(SYD) similar to transcriptional activator HBRM [Homo
sapiens] GI:414117; contains Pfam profiles PF00271:
Helicase conserved C-terminal domain, PF00176: SNF2
family N-terminal domain; identical to cDNA putative
chromatin remodeling protein SYD (SPLAYED) GI:13603720
Length = 3529
Score = 27.5 bits (58), Expect = 4.3
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 222 IRFDLRHTRSGKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 365
I D+ H +S KK + R+ + YE+K +QR+ R+ R K+ G
Sbjct: 546 IATDVEHLKSYKKHKHGRRIKQLEKYEQKMKEERQRRIRE-RQKEFFG 592
>At2g28290.1 68415.m03433 chromatin remodeling protein, putative
(SYD) similar to transcriptional activator HBRM [Homo
sapiens] GI:414117; contains Pfam profiles PF00271:
Helicase conserved C-terminal domain, PF00176: SNF2
family N-terminal domain; identical to cDNA putative
chromatin remodeling protein SYD (SPLAYED) GI:13603720
Length = 3574
Score = 27.5 bits (58), Expect = 4.3
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 222 IRFDLRHTRSGKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 365
I D+ H +S KK + R+ + YE+K +QR+ R+ R K+ G
Sbjct: 546 IATDVEHLKSYKKHKHGRRIKQLEKYEQKMKEERQRRIRE-RQKEFFG 592
>At2g07715.1 68415.m00965 ribosomal protein L2, putative similar to
ribosomal protein L2 [Gossypium arboreum] GI:17933133;
contains Pfam profile PF00181: Ribosomal Proteins L2,
RNA binding domain
Length = 307
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -2
Query: 230 KANPVD-LPPPKFVLKPNTNTTSGV 159
K N ++ PP+ +L+P TNT SG+
Sbjct: 82 KMNTIEKFAPPRKILEPTTNTISGL 106
>At1g11100.1 68414.m01271 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to RUSH-1alpha [Oryctolagus cuniculus]
GI:1655930; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1226
Score = 26.6 bits (56), Expect = 7.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 210 QVNWIRFDLRHTRSGKKFEPKHRLARHGLYEKKR 311
QV+W R L +S K ++ + +A GL+ K+R
Sbjct: 711 QVSWFRVVLDEAQSIKNYKTQASIACSGLHAKRR 744
>At5g51590.1 68418.m06396 DNA-binding protein-related contains Pfam
domain PF03479: Domain of unknown function (DUF296),
found in AT-hook motifs Pfam:PF02178
Length = 419
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 233 IKANPVDLPPPKFVLKPNTNTTSG 162
I+ PV PP F +P+TNT G
Sbjct: 347 IQPPPVSAPPVSFSHEPSTNTVHG 370
>At3g27880.1 68416.m03476 expressed protein
Length = 242
Score = 26.2 bits (55), Expect = 10.0
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +2
Query: 176 SYSVSRQTSEVASQLDSL*STTHSIWQEVRAQAQVSPPRPVREEEA 313
+YS S E + DS+ S + W R+ A +SP R+ ++
Sbjct: 93 TYSSSSDEEEEDDEFDSIPSEIYCPWTPARSTADMSPSGGCRKSKS 138
>At2g34380.1 68415.m04209 expressed protein
Length = 509
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 307 FFSYRPWRANLCLGSNFLPDRVCRRSKR 224
F + PW + CL F P R RR +R
Sbjct: 180 FIRFPPWLISKCLSFVFDPYRTMRRGRR 207
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,047,029
Number of Sequences: 28952
Number of extensions: 207167
Number of successful extensions: 647
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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