Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40126
(725 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 34 0.024
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 33 0.055
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 32 0.073
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S... 32 0.073
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 32 0.096
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 31 0.17
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 30 0.29
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 30 0.29
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 30 0.39
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 29 0.51
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 29 0.68
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 29 0.68
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 29 0.89
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 29 0.89
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 29 0.89
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 28 1.2
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 28 1.2
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 28 1.6
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 28 1.6
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p... 27 2.1
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 27 2.1
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 27 2.1
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 27 2.1
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 27 2.7
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 27 2.7
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 27 2.7
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 27 2.7
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 27 2.7
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb... 27 3.6
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo... 26 4.8
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 26 4.8
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 26 4.8
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 26 4.8
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 26 4.8
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 26 6.3
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 25 8.3
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 8.3
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 25 8.3
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 25 8.3
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 25 8.3
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 25 8.3
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 33.9 bits (74), Expect = 0.024
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWSLDHIDWHSSLDPVNNTTDDVTYK-FPLYKDCCNSISIHPY 194
SP G+YLVSG D +K+W L + S++ P + + F +KD S+++ P
Sbjct: 467 SPDGKYLVSGSLDNTIKLWELQCV---SNVAPSMYKEGGICKQTFTGHKDFILSVTVSPD 523
Query: 195 RPILATGS 218
+ +GS
Sbjct: 524 GKWIISGS 531
Score = 29.9 bits (64), Expect = 0.39
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 15 ISPCGRYLVSGGTDGVVKVWSLDHIDWHSSLDPVNNTTDDV 137
+SP G++++SG D ++ WS D +L NN+ V
Sbjct: 520 VSPDGKWIISGSKDRTIQFWSPDSPHSQLTLQGHNNSVISV 560
Score = 25.4 bits (53), Expect = 8.3
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWSL 80
SP G+YL +G D +++W +
Sbjct: 343 SPDGKYLATGVEDQQIRIWDI 363
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 32.7 bits (71), Expect = 0.055
Identities = 17/68 (25%), Positives = 29/68 (42%)
Frame = +3
Query: 15 ISPCGRYLVSGGTDGVVKVWSLDHIDWHSSLDPVNNTTDDVTYKFPLYKDCCNSISIHPY 194
I P G + +GG DG +++WS + I+ + + N + S+ P
Sbjct: 26 IHPDGSRIATGGLDGTIRIWSTEAINRENENENENEDLPKQLCCMSTHTGTVTSVRFSPN 85
Query: 195 RPILATGS 218
LA+GS
Sbjct: 86 GQYLASGS 93
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVW 74
SP G+YL SG D VV +W
Sbjct: 83 SPNGQYLASGSDDRVVIIW 101
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +3
Query: 3 IYFDISPCGRYLVSGGTDGVVKVWSLDHIDWHSSL-DPVNNTTDDVTYKFP 152
I FD P G+Y + D +KVW + ++ P NN+ ++ P
Sbjct: 182 ITFD--PAGKYFATESDDRTIKVWRVSDFSIEKTITGPFNNSPLSTYFRRP 230
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 32.3 bits (70), Expect = 0.073
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +3
Query: 27 GRYLVSGGTDGVVKVWSL--DHIDWHSSLDPVNN 122
G +L SGG DGV+++W + W SLD N
Sbjct: 391 GNWLASGGDDGVLRIWEVMTGRCVWKCSLDSFGN 424
>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
Raf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 638
Score = 32.3 bits (70), Expect = 0.073
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 21 PCGRYLVSGGTDGVVKVWSL 80
P G V+GG+DG+VKVW L
Sbjct: 556 PKGNLFVTGGSDGIVKVWDL 575
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 31.9 bits (69), Expect = 0.096
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 12 DISPCGRYLVSGGTDGVVKVWSLDHIDWHSSLDPVNNTTDDVTYKFPLY 158
DIS + LV+ D VK+W LD D H S+ ++ +VT++ Y
Sbjct: 583 DISYDSKLLVTCSADKNVKIWGLDFGDCHKSIFAHQDSIMEVTFQPDTY 631
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 15 ISPCGRYLVSGGTDGVVKVWSLDHIDWHSSL 107
ISP GR++ + D VKV+ LD + + +L
Sbjct: 542 ISPDGRFVAASLLDNTVKVYYLDSLKFFLNL 572
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = +3
Query: 27 GRYLVSGGTDGVVKVWSLDHIDWHSSLDPVNNTTDDVT 140
G Y + D VK+WSL SS D V TT VT
Sbjct: 489 GTYFATASADHTVKLWSL-----KSSFDFVPGTTRKVT 521
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 31.1 bits (67), Expect = 0.17
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 9 FDISPCGRYLVSGGTDGVVKVWSL 80
FD S GR+LV+ DG ++ W L
Sbjct: 578 FDFSDTGRWLVTASLDGTIRTWDL 601
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 30.3 bits (65), Expect = 0.29
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 15 ISPCGRYLVSGGTDGVVKVWSLDHIDWHSSLDPVNNTTDDVTY 143
I+P + +S GTD +++W+L+ + +L +N VT+
Sbjct: 625 INPSRQQCISAGTDAKIRIWNLESGELLQTLHGHSNLVSQVTF 667
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 30.3 bits (65), Expect = 0.29
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 27 GRYLVSGGTDGVVKVWSL-DHIDWHSSLDP 113
GRY+V+ G D ++KVW L + + HS P
Sbjct: 277 GRYMVTAGADSLLKVWDLRTYKELHSYYTP 306
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 29.9 bits (64), Expect = 0.39
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +3
Query: 6 YFDISPCGRYLVSGGTDGVVKVWSLDHIDWHSSLDPVNNTTDDVTY 143
+F + P +YL G G+V ++ L + ++ PV T D++T+
Sbjct: 397 HFCLDPSNKYLAIGSKSGIVNIYDLQTSNADAAPKPV-TTLDNITF 441
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 29.5 bits (63), Expect = 0.51
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 12 DISPCGRYLVSGGTDGVVKVWSL 80
+IS G+YL + G D +++VW +
Sbjct: 193 EISKSGKYLATAGKDAIIRVWKV 215
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 29.1 bits (62), Expect = 0.68
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 27 GRYLVSGGTDGVVKVWSLDHIDWHSSLD 110
G +VS DG+VKVWSL + ++LD
Sbjct: 561 GTQVVSAAADGLVKVWSLSSGECVATLD 588
Score = 28.7 bits (61), Expect = 0.89
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 3 IYFDISPCGRYLVSGGTDGVVKVWSL 80
I I P L +GG +G+VKVW +
Sbjct: 107 ITMTIDPTNTLLATGGAEGLVKVWDI 132
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +3
Query: 27 GRYLVSGGTDGVVKVW 74
G LVSGG D VV VW
Sbjct: 603 GSLLVSGGADAVVSVW 618
Score = 26.2 bits (55), Expect = 4.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 21 PCGRYLVSGGTDGVVKVWSL 80
P G +L+SG D V+VW++
Sbjct: 199 PTGSFLLSGSRDKTVQVWNI 218
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 29.1 bits (62), Expect = 0.68
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 12 DISPCGRYLVSGGTDGVVKVWSL 80
D +P G LVSG D V++W+L
Sbjct: 145 DFNPLGTLLVSGSWDETVRIWNL 167
Score = 27.5 bits (58), Expect = 2.1
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +3
Query: 15 ISPCGRYLVSGGTDGVVKVWS 77
+SP R++ + +DG +K+WS
Sbjct: 62 VSPNKRWIATSSSDGTIKIWS 82
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 28.7 bits (61), Expect = 0.89
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWSL 80
SP G+YLV+G D +K+W L
Sbjct: 369 SPDGKYLVTGTEDRQIKLWDL 389
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 12 DISPCGRYLVSGGTDGVVKVWSLD 83
D S GR++VSG D ++W ++
Sbjct: 409 DFSHNGRFIVSGSGDRTARLWDVE 432
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWSLD 83
SP GR SG D ++WS+D
Sbjct: 589 SPDGRQFASGSGDLRARIWSID 610
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 28.7 bits (61), Expect = 0.89
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 12 DISPCGRYLVSGGTDGVVKVWS 77
D SP G+ + SGG D V++WS
Sbjct: 480 DWSPDGQRVASGGADKAVRIWS 501
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 28.7 bits (61), Expect = 0.89
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 12 DISPCGRYLVSGGTDGVVKVWSL 80
DIS G+YL+S T+ V+ VW L
Sbjct: 28 DISTDGKYLLSASTNDVLLVWDL 50
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 15 ISPCGRYLVSGGTDGVVKVWSLDHIDWHSSLDPVNN 122
ISP G SGG DG + +W L+ SL+ N
Sbjct: 200 ISPDGSLCASGGRDGTLMLWDLNESTHLYSLEAKAN 235
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 15 ISPCGRYLVSGGTDGVVKVWSL 80
ISP R +VSG D +K+W++
Sbjct: 113 ISPDNRQVVSGSRDKTIKIWNI 134
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 28.3 bits (60), Expect = 1.2
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +3
Query: 27 GRYLVSGGTDGVVKVWSLD 83
G YL+SGG +GV+ +W ++
Sbjct: 274 GEYLLSGGQEGVLVLWQME 292
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 36 LVSGGTDGVVKVWSLDHIDWHSSLDPVNNTTDDV 137
+VSGG + + VW L +ID D + +T + V
Sbjct: 63 MVSGGANSSINVWDLQNIDQKEDEDLILDTLNAV 96
Score = 26.2 bits (55), Expect = 4.8
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 30 RYLVSGGTDGVVKVWSLD 83
RYL S GTD ++VW+++
Sbjct: 259 RYLASCGTDDRIRVWNME 276
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 36 LVSGGTDGVVKVWSLDHIDWHSSLDPVNNT 125
+VSGG DG V++W+ + + H L N+
Sbjct: 442 IVSGGYDGTVRIWNFNTGEQHCVLHNSRNS 471
>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 446
Score = 27.5 bits (58), Expect = 2.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWSL 80
SPCG +L +G G + +WSL
Sbjct: 85 SPCGSWLAAGTEKGNLYIWSL 105
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 27.5 bits (58), Expect = 2.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 15 ISPCGRYLVSGGTDGVVKVWSL 80
+SP + V+ G+DGVV+ W L
Sbjct: 1223 VSPDSSFFVTLGSDGVVRAWQL 1244
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 27.5 bits (58), Expect = 2.1
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +3
Query: 30 RYLVSGGTDGVVKVWSLDHIDWHSSLDPVNNTTDDVTYKFPLYKDCCNSISIHPYRPILA 209
R L+S +DG VK+W I + SL + +T S+++H + P+ A
Sbjct: 1192 RELISASSDGEVKLWD---IRMNHSLQTFSTDNSGLT-----------SLTVHSHAPVYA 1237
Query: 210 TGS 218
TGS
Sbjct: 1238 TGS 1240
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWSLDHIDWHSSLDPVNNTTDDVTY 143
SP G L + D VK+W L + ++ ++ DV Y
Sbjct: 358 SPNGYQLATSSADDTVKIWDLRKVSLAHTIPAHSSLVSDVRY 399
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 27.1 bits (57), Expect = 2.7
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +3
Query: 27 GRYLVSGGTDGVVKVWSL 80
GRYL GG D ++++W++
Sbjct: 250 GRYLAVGGQDRILRIWAV 267
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 654 YKKISSNLHIGLLDKYNGPKKNHQIFW 574
++ + N H+ LDK NGP K FW
Sbjct: 569 FEDLKVNTHLFRLDKPNGPPKYIHHFW 595
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 652 IMAYPILNTPHFPGIG*KWK 711
++AY +LN+PH P G KWK
Sbjct: 424 LIAYRVLNSPH-PRTGDKWK 442
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWSLDHIDWHSSLDPVNNTTDDVTYKFPLYKD 164
+P G L+S +G +K+W +D ++ S+ + TD + YK+
Sbjct: 238 NPVGDLLLSADVEGKIKIWDIDTMECIST----QSETDGAIWAVAWYKN 282
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +3
Query: 27 GRYLVSGGTDGVVKVWSLDHIDWHSSLDPVNNTTDDVTYKFP 152
GRYL +G T G V +WS L N+ VT P
Sbjct: 487 GRYLATGDTSGGVCIWSCKTAKLFKELGSDNSELIAVTNVLP 528
>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 710
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 33 YLVSGGTDGVVKVWSL 80
+LV G DGV+KVW L
Sbjct: 169 HLVGGCADGVIKVWDL 184
>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 610
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 651 KKISSNLHIGLLDKYNGPKKNH 586
K+ +S+LH+ LL+KY K H
Sbjct: 46 KRSTSDLHVQLLEKYRNGKVKH 67
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 3 IYFDISPCGRYLVSGGTDGVVKVWSL-DHIDWHSS 104
+Y +SP G +V+G D ++ W L D HS+
Sbjct: 508 LYLAMSPNGENIVTGAADETLRFWKLFDSKSKHSA 542
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3
Query: 36 LVSGGTDGVVKVW 74
L+SG DGVVKVW
Sbjct: 487 LISGAHDGVVKVW 499
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 4.8
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 3 IYFDISPCGRYLVSGGTDGVVKVWSL 80
+Y +SP G+ +V+G D ++ W L
Sbjct: 383 LYLSMSPDGQSIVTGAGDETLRFWKL 408
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 26.2 bits (55), Expect = 4.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 21 PCGRYLVSGGTDGVVKVWSLDHI 89
P G Y + D ++WS DHI
Sbjct: 431 PFGHYFATASHDQTAQLWSCDHI 453
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVW 74
SP G Y+ SG G V++W
Sbjct: 67 SPSGYYVASGDNQGNVRIW 85
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 8.3
Identities = 20/70 (28%), Positives = 29/70 (41%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWSLDHIDWHSSLDPVNNTTDDVTYKFPLYKDCCNSISIHPYR 197
SP G Y + D ++W ++H + L +DV DC +S HP
Sbjct: 454 SPFGYYFATASHDQTARLWDVEHA---APLRVFVGHQNDV--------DC---VSFHPNA 499
Query: 198 PILATGSGQY 227
LATGS +
Sbjct: 500 AYLATGSSDH 509
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/41 (21%), Positives = 22/41 (53%)
Frame = +3
Query: 39 VSGGTDGVVKVWSLDHIDWHSSLDPVNNTTDDVTYKFPLYK 161
++G DG++++W + ++ L+ N D ++F L +
Sbjct: 2454 ITGHPDGIIRIWE-KRLQSNAKLEAEKNNADRPKWRFHLLR 2493
>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 658
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +2
Query: 227 SFHRP--DKIFGEKTNNEAVDSSSDDS 301
SF RP D+IF TNN A+ + DS
Sbjct: 74 SFIRPFGDRIFQSSTNNSAISKETLDS 100
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 27 GRYLVSGGTDGVVKVWSL 80
G YL+S G D ++VW L
Sbjct: 310 GNYLLSRGEDNALRVWDL 327
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 426 VFQFIHL*LMLCEKMNVIDEFPP*KNLKTYGDSDLQ 533
V+Q+I L+ C+K D +PP +++ Y DS Q
Sbjct: 1149 VYQYIQQELLGCDKAREFDLYPP--SMQRYCDSCTQ 1182
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 15 ISPCGRYLVSGGTDGVVKVWSLD 83
+SP YL S G D +VK W L+
Sbjct: 213 VSPRHPYLFSCGEDKMVKCWDLE 235
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,167,079
Number of Sequences: 5004
Number of extensions: 66657
Number of successful extensions: 305
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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