Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40126
(725 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.033
SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.31
SB_40725| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.54
SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_38974| Best HMM Match : WD40 (HMM E-Value=1.1e-19) 31 0.72
SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41) 31 0.95
SB_20382| Best HMM Match : WD40 (HMM E-Value=1.7e-23) 31 0.95
SB_44731| Best HMM Match : WD40 (HMM E-Value=1.1e-11) 31 1.3
SB_9416| Best HMM Match : WD40 (HMM E-Value=0) 31 1.3
SB_39225| Best HMM Match : NIF (HMM E-Value=0) 30 1.7
SB_12300| Best HMM Match : UCH (HMM E-Value=6e-18) 30 1.7
SB_41443| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_39121| Best HMM Match : Band_41 (HMM E-Value=1.7e-08) 30 2.2
SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0) 30 2.2
SB_43298| Best HMM Match : WD40 (HMM E-Value=1.7e-30) 29 2.9
SB_52292| Best HMM Match : WD40 (HMM E-Value=1.6e-09) 29 3.8
SB_50898| Best HMM Match : UCH (HMM E-Value=6.9) 29 3.8
SB_48711| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_3361| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 5.1
SB_37875| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_30344| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_48737| Best HMM Match : WD40 (HMM E-Value=1.5e-36) 29 5.1
SB_27472| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_20511| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_12715| Best HMM Match : Adeno_E1A (HMM E-Value=1.3) 29 5.1
SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21) 29 5.1
SB_34680| Best HMM Match : WD40 (HMM E-Value=4.5e-07) 28 6.7
SB_14988| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-08) 28 6.7
SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_22092| Best HMM Match : WD40 (HMM E-Value=7.2e-07) 28 8.9
SB_58610| Best HMM Match : RVT_1 (HMM E-Value=0.061) 28 8.9
SB_48871| Best HMM Match : WD40 (HMM E-Value=0.0073) 28 8.9
SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_30331| Best HMM Match : Amidase (HMM E-Value=0) 28 8.9
SB_4548| Best HMM Match : WD40 (HMM E-Value=6.7e-35) 28 8.9
>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2332
Score = 35.9 bits (79), Expect = 0.033
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +3
Query: 15 ISPCGRYLVSGGTDGVVKVWSLDHIDWHSSL---DPVNNTTDDVTYKFPLYKDCCNSISI 185
I P G Y++SG +D ++VWSLD D + + PV V K L+ C NS+ +
Sbjct: 233 IYPFGSYIMSGSSDNTIRVWSLDMSDEVNRIHTNQPVKG-LGSVVGKDNLFSFCRNSLDL 291
>SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1649
Score = 32.7 bits (71), Expect = 0.31
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 15 ISPCGRYLVSGGTDGVVKVW 74
+ PCGRYLV+G D ++++W
Sbjct: 1586 VLPCGRYLVTGSRDKILRLW 1605
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 15 ISPCGRYLVSGGTDGVVKVWSLD 83
+SP +LVSG D VK+W +D
Sbjct: 756 LSPHADFLVSGAFDHTVKIWDMD 778
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 15 ISPCGRYLVSGGTDGVVKVWSLD 83
++P G ++S G D VKVWSL+
Sbjct: 924 VTPDGSKVISSGDDTQVKVWSLE 946
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWSLDHIDWHSSLDPVNNTTD 131
SP ++ +SG D +VK+W L+ SL V +T+D
Sbjct: 883 SPDDKFAISGSEDTMVKIWDLESAKEVRSL--VGHTSD 918
>SB_40725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 31.9 bits (69), Expect = 0.54
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWSLDHIDWHSS 104
SP GR+++SGG DG KV+ + I + S
Sbjct: 189 SPDGRWIISGGEDGAAKVYGWEPIKCYES 217
>SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 801
Score = 31.5 bits (68), Expect = 0.72
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWS 77
SP G+YLV+G DG ++VW+
Sbjct: 223 SPDGQYLVTGSVDGFIEVWN 242
>SB_38974| Best HMM Match : WD40 (HMM E-Value=1.1e-19)
Length = 584
Score = 31.5 bits (68), Expect = 0.72
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWSLDHI 89
SP G+Y+V+GG D ++ VWS +
Sbjct: 325 SPDGKYVVTGGEDDLITVWSFHEL 348
>SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41)
Length = 1487
Score = 31.1 bits (67), Expect = 0.95
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWS 77
SP G Y+ +GG DG VK+W+
Sbjct: 1260 SPDGNYIATGGDDGKVKLWN 1279
>SB_20382| Best HMM Match : WD40 (HMM E-Value=1.7e-23)
Length = 437
Score = 31.1 bits (67), Expect = 0.95
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 12 DISPCGRYLVSGGTDGVVKVWSLDHIDWHSSL 107
DIS +V+G D +K+W LD D H S+
Sbjct: 253 DISSDSTLIVTGSADKNIKIWGLDFGDCHKSI 284
>SB_44731| Best HMM Match : WD40 (HMM E-Value=1.1e-11)
Length = 256
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWSLDHI 89
SP G L SGG DG V+VW +
Sbjct: 190 SPDGTLLASGGMDGAVRVWDFGQV 213
>SB_9416| Best HMM Match : WD40 (HMM E-Value=0)
Length = 700
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +3
Query: 24 CGRYLVSGGTDGVVKVWSLDHIDWHSSLDPVNNTTDDVTYKFPLYKDCCNSISIHPYRPI 203
C ++ SGG D + +W ++ + ++L NNT T KD S++++P +
Sbjct: 129 CKEHVASGGLDKQIFLWDVNTL---TALTATNNTV--TTSSLSGQKDSIYSLAMNPAGTV 183
Query: 204 LATGS 218
L +GS
Sbjct: 184 LISGS 188
>SB_39225| Best HMM Match : NIF (HMM E-Value=0)
Length = 1772
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = +3
Query: 39 VSGGTDGVVKVWSLDHIDWHSSLDPVNNTTDDVTYKFPLYKDCCNSISIHPYRPILATGS 218
++ G G++ W L + + DP T+D+ Y L+ C+S+ +P + + G
Sbjct: 511 LAAGEQGLLS-WILRRLKLYKRYDPT--TSDETEYMENLFNCLCSSLMFNPNKDLFLRGE 567
Query: 219 G 221
G
Sbjct: 568 G 568
>SB_12300| Best HMM Match : UCH (HMM E-Value=6e-18)
Length = 457
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWSLDHIDWHSSLD---PVNNTTDDVTYKFPLYKDCCNSIS 182
SPCG SG ++G S+D D S++D P ++D P K+C N+ S
Sbjct: 395 SPCGTETDSGVSEGYSDGVSIDDDDVGSNIDNEQPSVRASNDAAQHLPNAKECFNASS 452
>SB_41443| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVW 74
SP G+YL SGG D ++ +W
Sbjct: 300 SPDGKYLASGGNDNLLNIW 318
>SB_39121| Best HMM Match : Band_41 (HMM E-Value=1.7e-08)
Length = 558
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 3 IYFDISPCGRYLVSGGTDGVVKVWSLD 83
I+ +S CG ++ SG DG+ VW+ D
Sbjct: 169 IHSAMSACGSFVFSGSEDGLAYVWNTD 195
>SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0)
Length = 2376
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +2
Query: 176 HINSSI*THIGYRIWPISFHRPDKIFGEKTNNEAVDSSSDDSINQYDIRYSSHS 337
H N S HI I F R K+FG +N V+++ +YDI SH+
Sbjct: 2113 HCNHS--KHIMMAIHKPDFIRAFKLFGNHLHNSGVNNAKSAIKERYDINEGSHT 2164
>SB_43298| Best HMM Match : WD40 (HMM E-Value=1.7e-30)
Length = 685
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVW 74
SP G+ L SGG D VV +W
Sbjct: 480 SPDGKLLASGGNDNVVNIW 498
>SB_52292| Best HMM Match : WD40 (HMM E-Value=1.6e-09)
Length = 743
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 24 CGRYLVSGGTDGVVKVWSLDHIDWHSSLDPVNNT 125
CG +LV+G + G VK W + + P N T
Sbjct: 371 CGNFLVAGTSQGYVKCWDVSRREAKQHCTPKNLT 404
>SB_50898| Best HMM Match : UCH (HMM E-Value=6.9)
Length = 176
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWSLDHIDWHSSLD---PVNNTTDDVTYKFPLYKDCCN 173
SPCG SG ++G S+D D S++D P ++D P K+C N
Sbjct: 114 SPCGTETDSGVSEGYSDGVSIDDDDVGSNIDNEQPSVRASNDAAQHLPNAKECFN 168
>SB_48711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 15 ISPCGRYLVSGGTDGVVKVWSLD 83
I+ G+YL SGG D ++++W D
Sbjct: 122 ITTDGKYLASGGKDKLIRIWDPD 144
>SB_3361| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 247
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWSLDHIDW-HSSLDP 113
SP GR +VSG D +K+W D H+ DP
Sbjct: 79 SPDGRLIVSGSDDKTIKLWDRTSKDCVHTFYDP 111
>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 3804
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 310 LVNRIIRTRIYGFIIRFLTKDFIGSV 233
+V R++R RIY IRF KD+ G +
Sbjct: 807 VVTRVLRPRIYCRFIRFYPKDWYGHI 832
>SB_37875| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 544
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 15 ISPCGRYLVSGGTDGVVKVWSL 80
+SPCGR++ S G VK+W +
Sbjct: 248 LSPCGRFVASAGFTPDVKLWEV 269
>SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1803
Score = 28.7 bits (61), Expect = 5.1
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +3
Query: 6 YFDISPCGRYLVSGGTDGVVKVWSLD 83
Y + SP G +++S D +VW D
Sbjct: 1639 YTEFSPSGEFIISSSIDNTAQVWRFD 1664
>SB_30344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 418
Score = 28.7 bits (61), Expect = 5.1
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +3
Query: 27 GRYLVSGGTDGVVKVWS 77
G +L+S G+DG V++WS
Sbjct: 402 GEFLLSSGSDGTVRIWS 418
>SB_48737| Best HMM Match : WD40 (HMM E-Value=1.5e-36)
Length = 885
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +3
Query: 27 GRYLVSGGTDGVVKVWSLDH-IDWHSS-LDPVNNTTDDV-TYKFPLYKDCCNSISIH 188
G+ +S G D +VK WS+ + +D ++ L+P+ V + P KDC +I+ H
Sbjct: 121 GQSFISVGDDKIVKQWSMSNALDGTTTKLEPLQTILGKVKLWNLPT-KDCLRTITAH 176
>SB_27472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 38
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 12 DISPCGRYLVSGGTDGVVKVWSLDHIDWHSS 104
+ SP G Y++SG DG + +W DW S+
Sbjct: 9 NFSPDGSYVISGDADGKLNIW-----DWKST 34
>SB_20511| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 254 GEKTNNEAVDSSSDDSINQYDIRYSSHSENCLTFWWTGDVIELNKNL 394
G T+N A++SSS D+ +QY + EN + + G L K L
Sbjct: 221 GMGTSNSAIESSSADTYSQYKFAMTQFEENPIAPY--GQAFGLTKQL 265
>SB_12715| Best HMM Match : Adeno_E1A (HMM E-Value=1.3)
Length = 909
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = -2
Query: 175 LLQQSLYKGNL*VTSSVVLLTGSKLECQSI*SSDQTFTTPS 53
LL QS ++ N V SSV LL S+ EC I S+ T S
Sbjct: 212 LLSQSRHEDNESVPSSVTLLNQSRNECGEIDPSNVTLLNQS 252
>SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21)
Length = 1049
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWS 77
S GR + S TDG+VKVW+
Sbjct: 765 SSSGRTIASADTDGIVKVWT 784
>SB_34680| Best HMM Match : WD40 (HMM E-Value=4.5e-07)
Length = 454
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 30 RYLVSGGTDGVVKVWSL 80
+YL +G DGVV++WSL
Sbjct: 397 QYLAAGYNDGVVRIWSL 413
>SB_14988| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-08)
Length = 619
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 254 GEKTNNEAVDSSSDDSINQYD 316
GE+ N++A D SS+D IN +D
Sbjct: 130 GEEANDDANDYSSEDDINSHD 150
>SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 459
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWS 77
SP GRYL SG D V +WS
Sbjct: 342 SPDGRYLASGSFDKRVHIWS 361
>SB_22092| Best HMM Match : WD40 (HMM E-Value=7.2e-07)
Length = 338
Score = 27.9 bits (59), Expect = 8.9
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +3
Query: 33 YLVSGGTDGVVKVWSL 80
YLV+G DG++KVW +
Sbjct: 70 YLVTGDADGLIKVWDI 85
>SB_58610| Best HMM Match : RVT_1 (HMM E-Value=0.061)
Length = 1445
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = -3
Query: 255 PKILSGL*NDIGQIR*PIWVYMDELICYCSNLCIKETYK 139
P+I G + Q+R P W D ++ C +TY+
Sbjct: 1219 PRISGGRQKGVDQLRGPFWGKCDYIVLVCPTFVYNKTYE 1257
>SB_48871| Best HMM Match : WD40 (HMM E-Value=0.0073)
Length = 614
Score = 27.9 bits (59), Expect = 8.9
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +3
Query: 33 YLVSGGTDGVVKVWSL 80
YLV+G DG++KVW +
Sbjct: 70 YLVTGDADGLIKVWDI 85
>SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 622
Score = 27.9 bits (59), Expect = 8.9
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 27 GRYLVSGGTDGVVKVWSL 80
G+YL SGG D ++ +W +
Sbjct: 38 GKYLASGGDDNLIMIWQM 55
>SB_30331| Best HMM Match : Amidase (HMM E-Value=0)
Length = 555
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +3
Query: 171 NSISIHPYRPILA--TGSGQYHFTDPIKSLVRK 263
NS SI+P+ +L GS QYHF P+ + K
Sbjct: 400 NSGSINPFLEMLKYLVGSSQYHFITPVVGSLEK 432
>SB_4548| Best HMM Match : WD40 (HMM E-Value=6.7e-35)
Length = 844
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 12 DISPCGRYLVSGGTDGVVKVWSL 80
DISP G L +GG D V+ W L
Sbjct: 476 DISPDGTKLWTGGLDNTVRSWDL 498
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,273,350
Number of Sequences: 59808
Number of extensions: 437490
Number of successful extensions: 1163
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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