Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40126
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.0  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   9.0  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 648  FYNGLPHFKYTPFS 689
            F  G+PH  +TPF+
Sbjct: 1149 FMEGMPHLPFTPFN 1162


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 204 IWVYMDELICYCSNLCIK 151
           +W+Y D+ I Y   L +K
Sbjct: 143 LWLYKDKTILYMVKLTLK 160


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 669 NGVGHYKK-ISSNLHIGLLDKYNGPK 595
           N V  +K+ I S++  GLLDK+  PK
Sbjct: 628 NWVYEWKELIPSHIMAGLLDKFFFPK 653


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 493 GGNSSITFIFSHNINYKCIN*NT*RFIC 410
           GGNS+I F+     ++  +N N   F C
Sbjct: 129 GGNSTIIFLLIRFKSFSLLNFNLLFFNC 156


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,953
Number of Sequences: 438
Number of extensions: 4990
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)