Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40126
(725 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g21520.1 68417.m03110 transducin family protein / WD-40 repea... 55 4e-08
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 42 6e-04
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 41 0.001
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 40 0.002
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 38 0.005
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 38 0.005
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 36 0.027
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 36 0.036
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 36 0.036
At5g45760.2 68418.m05626 transducin family protein / WD-40 repea... 34 0.11
At5g45760.1 68418.m05625 transducin family protein / WD-40 repea... 34 0.11
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 34 0.11
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 33 0.25
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 32 0.45
At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5 ... 32 0.45
At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pf... 31 0.59
At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pf... 31 0.59
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 31 0.78
At4g29380.1 68417.m04197 protein kinase family protein / WD-40 r... 31 0.78
At2g18900.1 68415.m02205 transducin family protein / WD-40 repea... 31 0.78
At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 ... 31 1.0
At2g37160.1 68415.m04559 transducin family protein / WD-40 repea... 31 1.0
At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1 ... 30 1.4
At3g53390.1 68416.m05892 transducin family protein / WD-40 repea... 30 1.8
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 30 1.8
At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pf... 29 2.4
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 29 2.4
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 29 2.4
At3g01340.1 68416.m00051 protein transport protein SEC13 family ... 29 2.4
At2g22040.1 68415.m02617 transducin family protein / WD-40 repea... 29 2.4
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 29 2.4
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 29 3.1
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea... 29 3.1
At1g64350.1 68414.m07292 transducin family protein / WD-40 repea... 29 3.1
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 29 3.1
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 29 4.1
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 29 4.1
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea... 29 4.1
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 29 4.1
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea... 29 4.1
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea... 28 5.5
At2g40480.1 68415.m04996 expressed protein contains Pfam profile... 28 5.5
At2g30050.1 68415.m03654 transducin family protein / WD-40 repea... 28 5.5
At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf... 28 7.2
At5g14530.1 68418.m01703 transducin family protein / WD-40 repea... 28 7.2
At1g03110.1 68414.m00288 transducin family protein / WD-40 repea... 28 7.2
At5g49650.2 68418.m06145 xylulose kinase, putative similar to D-... 27 9.6
At5g49650.1 68418.m06146 xylulose kinase, putative similar to D-... 27 9.6
At5g27945.1 68418.m03364 transducin family protein / WD-40 repea... 27 9.6
At4g05410.1 68417.m00823 transducin family protein / WD-40 repea... 27 9.6
At3g18910.1 68416.m02401 F-box family protein contains Pfam:PF00... 27 9.6
>At4g21520.1 68417.m03110 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to guanine nucleotide-binding protein beta 5
(GI:1001939) [Mesocricetus auratus]
Length = 425
Score = 55.2 bits (127), Expect = 4e-08
Identities = 29/80 (36%), Positives = 41/80 (51%)
Frame = +3
Query: 3 IYFDISPCGRYLVSGGTDGVVKVWSLDHIDWHSSLDPVNNTTDDVTYKFPLYKDCCNSIS 182
++FDI PCGR+L +GG DG+V ++ L +W S ++T N+ S
Sbjct: 306 VFFDIEPCGRHLGTGGQDGLVHMYDLQTGNWVSGYQAASDTV--------------NAFS 351
Query: 183 IHPYRPILATGSGQYHFTDP 242
HPY P+ AT SG F P
Sbjct: 352 FHPYLPMAATSSGHRRFAIP 371
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 41.5 bits (93), Expect = 6e-04
Identities = 25/69 (36%), Positives = 35/69 (50%)
Frame = +3
Query: 12 DISPCGRYLVSGGTDGVVKVWSLDHIDWHSSLDPVNNTTDDVTYKFPLYKDCCNSISIHP 191
+ SP GR++VSGG D VVKVW L T + ++F ++ S+ HP
Sbjct: 98 EFSPDGRWVVSGGLDNVVKVWDL--------------TAGKLLHEFKCHEGPIRSLDFHP 143
Query: 192 YRPILATGS 218
+LATGS
Sbjct: 144 LEFLLATGS 152
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/67 (35%), Positives = 35/67 (52%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWSLDHIDWHSSLDPVNNTTDDVTYKFPLYKDCCNSISIHPYR 197
+P GR++VSGG D VVKVW L T + ++F ++ S+ HP+
Sbjct: 245 TPDGRWIVSGGEDNVVKVWDL--------------TAGKLLHEFKSHEGKIQSLDFHPHE 290
Query: 198 PILATGS 218
+LATGS
Sbjct: 291 FLLATGS 297
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/67 (35%), Positives = 34/67 (50%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWSLDHIDWHSSLDPVNNTTDDVTYKFPLYKDCCNSISIHPYR 197
+P GR++VSGG D VVKVW L T + ++F ++ S+ HP
Sbjct: 151 TPDGRWVVSGGLDNVVKVWDL--------------TAGKLLHEFKFHEGPIRSLDFHPLE 196
Query: 198 PILATGS 218
+LATGS
Sbjct: 197 FLLATGS 203
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 38.3 bits (85), Expect = 0.005
Identities = 23/67 (34%), Positives = 34/67 (50%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWSLDHIDWHSSLDPVNNTTDDVTYKFPLYKDCCNSISIHPYR 197
+P GR++VSGG D +VKVW L T + +F ++ S+ HP+
Sbjct: 152 TPDGRWVVSGGEDNIVKVWDL--------------TAGKLLTEFKSHEGQIQSLDFHPHE 197
Query: 198 PILATGS 218
+LATGS
Sbjct: 198 FLLATGS 204
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 38.3 bits (85), Expect = 0.005
Identities = 23/67 (34%), Positives = 34/67 (50%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWSLDHIDWHSSLDPVNNTTDDVTYKFPLYKDCCNSISIHPYR 197
+P GR++VSGG D +VKVW L T + +F ++ S+ HP+
Sbjct: 152 TPDGRWVVSGGEDNIVKVWDL--------------TAGKLLTEFKSHEGQIQSLDFHPHE 197
Query: 198 PILATGS 218
+LATGS
Sbjct: 198 FLLATGS 204
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 35.9 bits (79), Expect = 0.027
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWSL 80
SP G+YL +GG DGVVK+W +
Sbjct: 207 SPDGKYLATGGEDGVVKIWRI 227
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 35.5 bits (78), Expect = 0.036
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWSL 80
SP GRYL S G DGV++VWS+
Sbjct: 260 SPDGRYLASAGEDGVLRVWSV 280
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 35.5 bits (78), Expect = 0.036
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWSL 80
SP GRYL S G DGV++VWS+
Sbjct: 260 SPDGRYLASAGEDGVLRVWSV 280
>At5g45760.2 68418.m05626 transducin family protein / WD-40 repeat
family protein
Length = 334
Score = 33.9 bits (74), Expect = 0.11
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 27 GRYLVSGGTDGVVKVWSLDHIDWHSSLDPVNNTTD 131
GR+L+SGG D VK+W D LDP NN +
Sbjct: 263 GRFLISGGNDKTVKIW-----DCFKCLDPNNNNNN 292
>At5g45760.1 68418.m05625 transducin family protein / WD-40 repeat
family protein
Length = 360
Score = 33.9 bits (74), Expect = 0.11
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 27 GRYLVSGGTDGVVKVWSLDHIDWHSSLDPVNNTTD 131
GR+L+SGG D VK+W D LDP NN +
Sbjct: 289 GRFLISGGNDKTVKIW-----DCFKCLDPNNNNNN 318
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 33.9 bits (74), Expect = 0.11
Identities = 23/62 (37%), Positives = 32/62 (51%)
Frame = +3
Query: 33 YLVSGGTDGVVKVWSLDHIDWHSSLDPVNNTTDDVTYKFPLYKDCCNSISIHPYRPILAT 212
+ VSG D +KVWSLD I S +P+N T V KD NS+++ ++ T
Sbjct: 461 FFVSGSGDRTLKVWSLDGIS-EDSEEPINLKTRSVVAAHD--KD-INSVAVARNDSLVCT 516
Query: 213 GS 218
GS
Sbjct: 517 GS 518
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 12 DISPCGRYLVSGGTDGVVKVWSLDHIDWHSSL 107
DIS G +V+G D +K+W LD D H S+
Sbjct: 589 DISSDGELIVTGSQDKNLKIWGLDFGDCHKSI 620
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9
(SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies)
Length = 1677
Score = 31.9 bits (69), Expect = 0.45
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +3
Query: 27 GRYLVSGGTDGVVKVWSLD 83
GRY+++G D +VKVWS+D
Sbjct: 257 GRYVITGSDDRLVKVWSMD 275
>At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; similar to "Will die slowly" protein,
Drosophia; putative cdc20 protein - Arabidopsis
thaliana, EMBL:AF029262
Length = 411
Score = 31.9 bits (69), Expect = 0.45
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWSLDHIDWHSSLDPVNNTTDDVTYKFPLYKDCCNSISIHPYR 197
S G+ L SGG D VV +W DH SS N T ++F + +++ P++
Sbjct: 227 SESGKKLASGGNDNVVHIW--DHRSVASS-----NPTRQWLHRFEEHTAAVRALAWCPFQ 279
Query: 198 -PILATGSG 221
+LATG G
Sbjct: 280 ASLLATGGG 288
>At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 31.5 bits (68), Expect = 0.59
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWSL 80
SP G+Y+ S G D VV+VWS+
Sbjct: 227 SPDGKYIASAGEDCVVRVWSI 247
>At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 31.5 bits (68), Expect = 0.59
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWSL 80
SP G+Y+ S G D VV+VWS+
Sbjct: 227 SPDGKYIASAGEDCVVRVWSI 247
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 31.1 bits (67), Expect = 0.78
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 15 ISPCGRYLVSGGTDGVVKVWSL 80
+SP GRY+ SG DG + +W L
Sbjct: 549 MSPDGRYMASGDEDGTIMMWDL 570
>At4g29380.1 68417.m04197 protein kinase family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat; contains Pfam PF00069: Protein kinase domain;
contains PF02985: HEAT repeat; similar to adaptor protein
(GI:1817584) [Homo sapiens]; similar to VPS15 protein
(GI:6103009) [Pichia pastoris]
Length = 1494
Score = 31.1 bits (67), Expect = 0.78
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWSL 80
SPCG + VSG + GV+ +W L
Sbjct: 1242 SPCGNWFVSGSSRGVLTLWDL 1262
>At2g18900.1 68415.m02205 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
related to LACK protective antigen (GI:13625467)
[Leishmania donovani]
Length = 804
Score = 31.1 bits (67), Expect = 0.78
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 12 DISPCGRYLVSGGTDGVVKVWSLD 83
+ S G YL SGG +GV+ VW LD
Sbjct: 290 NFSSDGAYLYSGGREGVLVVWQLD 313
>At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3
Pfam PF00400: WD domain, G-beta repeats;
Length = 1327
Score = 30.7 bits (66), Expect = 1.0
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +3
Query: 36 LVSGGTDGVVKVWSLDH 86
LVSGG+DG++ +WS DH
Sbjct: 150 LVSGGSDGLLVLWSADH 166
>At2g37160.1 68415.m04559 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 544
Score = 30.7 bits (66), Expect = 1.0
Identities = 10/19 (52%), Positives = 17/19 (89%)
Frame = +3
Query: 27 GRYLVSGGTDGVVKVWSLD 83
G+YL++GG D +V+VWS++
Sbjct: 357 GKYLLTGGEDDLVQVWSME 375
>At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1
significant, 2 weak WD-40 repeats (PF00400); similar to
transducin beta-like 1 protein.(SP:O60907) [Homo
sapiens]
Length = 467
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 3 IYFDISPCGRYLVSGGTDGVVKVWSL 80
I F I P R+++SGG D ++WS+
Sbjct: 392 IEFGIDPSERFILSGGDDCYTRIWSI 417
>At3g53390.1 68416.m05892 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 558
Score = 29.9 bits (64), Expect = 1.8
Identities = 9/19 (47%), Positives = 17/19 (89%)
Frame = +3
Query: 27 GRYLVSGGTDGVVKVWSLD 83
G+Y+++GG D +V+VWS++
Sbjct: 357 GKYILTGGEDDLVQVWSME 375
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 29.9 bits (64), Expect = 1.8
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +3
Query: 27 GRYLVSGGTDGVVKVWSLD 83
GRY+++G D +VK+WS++
Sbjct: 317 GRYVITGSDDRLVKIWSME 335
>At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 825
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +3
Query: 27 GRYLVSGGTDGVVKVWSLDHIDWHSSLDPVNNTTDDVTYKFPLYKDCCNSISIHPYR 197
GRYL S G D V+++W + + L ++ D F L +S+ P R
Sbjct: 375 GRYLASAGEDCVIQIWKVVESERKGELLSMDKQEDGSINLFLLANGSPEPVSMSPKR 431
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Frame = +3
Query: 33 YLVSGGTDGVVKVWSL-DH--IDW---HSSLDPVNNTTDDVTYKFPLYKDCCNSISIH 188
Y +SG D V++WS+ DH +DW H + T D YK C + H
Sbjct: 523 YFISGSLDAKVRIWSIPDHQVVDWNDLHEMVTAACYTPDGQGALVGSYKGTCCLYNTH 580
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 29.5 bits (63), Expect = 2.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 15 ISPCGRYLVSGGTDGVVKVWSLD 83
+SP +YL + +D VK+W++D
Sbjct: 219 LSPANKYLATASSDKTVKIWNVD 241
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Frame = +3
Query: 30 RYLVSGGTDGVVKVWSLDH---IDWHSSLDPVNN---TTDDVTYKFPLYKDCCNSIS 182
RY +SG D V+VWS+ +DW+ + V + T D YK C S
Sbjct: 567 RYFISGSLDAKVRVWSIPDRQVVDWYDLHEMVTSACYTPDGQGVLVGSYKGSCRMYS 623
>At3g01340.1 68416.m00051 protein transport protein SEC13 family
protein / WD-40 repeat family protein similar to Protein
transport protein SEC13 SP|Q04491 {Saccharomyces
cerevisiae} and SEC13 (SP:P53024) [Pichia pastoris]
Length = 302
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +3
Query: 36 LVSGGTDGVVKVWSLDHIDWHSSLDP-VNNTTD 131
L SGG D VKVW + W P +N TD
Sbjct: 179 LASGGCDSTVKVWKFSNGSWKMDCFPALNKHTD 211
>At2g22040.1 68415.m02617 transducin family protein / WD-40 repeat
family protein similar to Pop3 (GI:3434986)
[Schizosaccharomyces pombe]; contains Pfam PF00400: WD
domain, G-beta repeat (6 copies, 2 weak);
Length = 312
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 15 ISPCGRYLVSGGTDGVVKVWSLD 83
+SP +YL + +D VK+W+LD
Sbjct: 225 LSPGNKYLATASSDKTVKIWNLD 247
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 15 ISPCGRYLVSGGTDGVVKVWSL 80
+SP G SGG DGVV +W L
Sbjct: 202 VSPDGSLCASGGKDGVVLLWDL 223
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 15 ISPCGRYLVSGGTDGVVKVWSL 80
+SP G SGG DGV+ +W L
Sbjct: 201 VSPDGSLCASGGKDGVILLWDL 222
>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
family protein Similar to U4/U6 small nuclear
ribonucleoprotein hPrp4 (gi:2708305)[Homo sapiens];
contains 4 WD-40 repeats
Length = 276
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 12 DISPCGRYLVSGGTDGVVKVWSL 80
D SP G +L SGG D ++W L
Sbjct: 179 DFSPNGYHLASGGEDNQCRIWDL 201
>At1g64350.1 68414.m07292 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to nuclear pore protein SEH1 (SP:P53011)
[Saccharomyces cerevisiae]
Length = 326
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Frame = +3
Query: 27 GRYLVSGGTDGVVKVWSLD-HIDWH--SSLDPV 116
G L S G+DG+VK+W + + +WH ++L+PV
Sbjct: 292 GMTLASTGSDGMVKLWQSNLNGEWHEQATLEPV 324
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 15 ISPCGRYLVSGGTDGVVKVWSL 80
+SP G SGG DGV+ +W L
Sbjct: 201 VSPDGSLCASGGKDGVILLWDL 222
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 28.7 bits (61), Expect = 4.1
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 27 GRYLVSGGTDGVVKVWSL 80
G++L S G DG+V+VW +
Sbjct: 233 GKFLASSGEDGIVRVWKV 250
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 12 DISPCGRYLVSGGTDGVVKVW 74
D SP G +VSGG D V+K+W
Sbjct: 451 DWSPDGEKVVSGGKDRVLKLW 471
>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
family protein contains similarity to regulatory protein
Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
(6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
Length = 781
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 30 RYLVSGGTDGVVKVWSL 80
RY+ SGGT +VK+W L
Sbjct: 106 RYICSGGTGQIVKIWDL 122
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 15 ISPCGRYLVSGGTDGVVKVWSLD 83
ISP G Y++SG +DG +W ++
Sbjct: 346 ISPDGEYVLSGSSDGNAYIWQVN 368
>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 5 WD-40 repeats (PF00400); similar to beta
transducin-like protein HET-E2C*4
(GP:17225206)[Podospora anserina]
Length = 530
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 33 YLVSGGTDGVVKVWSL 80
+LVSGG DGVVK W +
Sbjct: 150 HLVSGGDDGVVKYWDV 165
>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
discoideum]
Length = 515
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 15 ISPCGRYLVSGGTDGVVKVWSL 80
ISP Y+ +G DG V VWSL
Sbjct: 453 ISPDDDYVAAGSADGSVHVWSL 474
>At2g40480.1 68415.m04996 expressed protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827);
expression supported by MPSS
Length = 541
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 432 EIHKDSSA*TQRRRFLFNSITSPVHQNVKQFS 337
E+H++ TQRR+F F IT P+ + K+ S
Sbjct: 508 EVHEEKQYVTQRRKFGFIHITLPLQKQSKKKS 539
>At2g30050.1 68415.m03654 transducin family protein / WD-40 repeat
family protein similar to SEC13-related protein
(SP:P55735) [Homo sapiens]
Length = 302
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +3
Query: 36 LVSGGTDGVVKVWSLDHIDWHSSLDP 113
L SGG D VKVW L + W P
Sbjct: 179 LASGGCDNTVKVWKLANGSWKMDCFP 204
>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 709
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 27 GRYLVSGGTDGVVKVWSL 80
G+YL S G D VV+VW++
Sbjct: 269 GKYLASAGEDCVVRVWNI 286
>At5g14530.1 68418.m01703 transducin family protein / WD-40 repeat
family protein similar to Will die slowly protein
(SP:Q9V3J8) [Drosophila melanogaster] ; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies, 1 weak)
Length = 330
Score = 27.9 bits (59), Expect = 7.2
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWSLDH 86
+P G+Y++SG DG + W++++
Sbjct: 253 TPDGKYVLSGSGDGTLHAWNIEN 275
>At1g03110.1 68414.m00288 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat domain 4 protein (GI:9955698) [Mus
musculus]
Length = 427
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWSLD 83
S G+ VS G D +VK+WS D
Sbjct: 72 STSGKLFVSAGDDKLVKIWSAD 93
>At5g49650.2 68418.m06145 xylulose kinase, putative similar to
D-xylulokinase [Pichia stipitis] gi|8100400|gb|AAF72328
Length = 426
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 257 EKTNNEAVDSSSDDSINQYDIRYSSHSENCLTFWWTGD 370
EK A ++ SI+QY ++ +NC+ W+GD
Sbjct: 246 EKLGKLAPAYATAGSISQYFVQRFGFEKNCVVVQWSGD 283
>At5g49650.1 68418.m06146 xylulose kinase, putative similar to
D-xylulokinase [Pichia stipitis] gi|8100400|gb|AAF72328
Length = 558
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 257 EKTNNEAVDSSSDDSINQYDIRYSSHSENCLTFWWTGD 370
EK A ++ SI+QY ++ +NC+ W+GD
Sbjct: 246 EKLGKLAPAYATAGSISQYFVQRFGFEKNCVVVQWSGD 283
>At5g27945.1 68418.m03364 transducin family protein / WD-40 repeat
family protein fizzy-related (FZR); contains 6 WD-40
repeats (PF00400); WD-repeat protein,
carrot,(gi:2253631) PIR:T14352
Length = 428
Score = 27.5 bits (58), Expect = 9.6
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWSLDHIDWHSSLDPVNNTTDDVTYKFPLYKDCCNSISIHPYR 197
S G+ L SGG D VV HI W SL +N T ++F + +++ P++
Sbjct: 245 SESGKKLASGGNDNVV------HI-WDRSL-ASSNPTRQWLHRFEEHTAAVRALAWCPFQ 296
Query: 198 -PILATGSG 221
+LATG G
Sbjct: 297 ASLLATGGG 305
>At4g05410.1 68417.m00823 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); U3
snoRNP-associated 55-kDa protein, Homo sapiens,
gb:NP_004695; Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) [Podospora anserina]
Length = 504
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 15 ISPCGRYLVSGGTDGVVKVWSLDHIDWHSSLDPVNNTTDDVTYKF 149
+S GRYL +GG D V +W + + + NT + +++
Sbjct: 230 VSSDGRYLATGGVDRHVHIWDVRTREHVQAFPGHRNTVSCLCFRY 274
>At3g18910.1 68416.m02401 F-box family protein contains Pfam:PF00646
F-box domain ; contains TIGRFAM TIGR01640: F-box protein
interaction domain ; contains TIGRFAM TIGR01640: F-box
protein interaction domain
Length = 388
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 209 YRIWPISFHRPDKIFGEKTNNEAVDSSSDDSINQYDIRYSSHSENCL 349
YRI+PISF+ + +E +D S +S ++I H E L
Sbjct: 66 YRIFPISFNLHGNSPSLELKSELIDPHSKNSAAPFEISRVIHCEGLL 112
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,172,255
Number of Sequences: 28952
Number of extensions: 331305
Number of successful extensions: 1049
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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