Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40125
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    33   0.033
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    28   1.2  
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    28   1.2  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    27   3.8  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    26   6.6  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    26   6.6  
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    25   8.7  

>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 33.5 bits (73), Expect = 0.033
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 486 HHYLMPS*YLYYHSVKLFILENKTRNFNIVIFNQIYKEI 602
           HHYL+P   ++YH +    LE+    F+++I   ++ EI
Sbjct: 82  HHYLIPDSNIFYHCID--ALEHPNNFFDVIILQTVFSEI 118


>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = -2

Query: 453 CNKIYL*IGLNITIQKTLVFYSHYMNIQKLPKTESEHPTFHMVLSAL 313
           C +++L  G  I + + L+FYS+      + K ++E+P +H  LSAL
Sbjct: 17  CLRLFL-FGSLILLLRPLIFYSN----TTMKKLKTEYPIYHRHLSAL 58


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/38 (26%), Positives = 24/38 (63%)
 Frame = -3

Query: 560 PCFILQNKQFHRMVVQVS*RHEIMVNHLDACEELLNAI 447
           P  +LQN++FH+++ +   +HE  +  ++A ++ L  +
Sbjct: 347 PASLLQNEEFHKLIEERQRQHEERLKRINANKKALEEL 384


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 161 RASAPKGGRAALPAAPEIIQNQTRWGERRSPLSVNNAI 48
           R  A + GR AL  +  + +N TR+    +P+SV ++I
Sbjct: 104 RRPAGRRGRPALNTSNSLERNGTRYVSAEAPISVKSSI 141


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 6   ATPWRYPWLMLFG*NSIIY*KWGPSFSPSC-LVLNYLRRCGKSSPSAFGC 152
           A+ W + W M+    + IY  W    +    L+L Y+R   KSS + F C
Sbjct: 189 ASIWAFDWPMMNLQETFIY--WDRCTNACLRLLLCYIRYTNKSSETGFSC 236


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -2

Query: 696 KITKFNTGLCESSLEV*VTHLDAYEELLNAIKSLYKFD 583
           K +KF  GL      + V H  A E++  A+  + K D
Sbjct: 188 KFSKFPNGLVTQLCNIFVNHSKAREDIQKAVNHICKID 225


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 596 FINLIKYNNIKIPCFILQN 540
           F+  +  N++KIPCFIL +
Sbjct: 307 FVGGVLENHLKIPCFILHS 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,459,727
Number of Sequences: 5004
Number of extensions: 76102
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)