Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40125
         (751 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0110 + 8500204-8500460,8502544-8502612,8502725-8502790,850...    28   9.1  
03_05_0036 + 20094462-20095296,20111755-20111822,20112265-20112402     28   9.1  

>05_03_0110 +
           8500204-8500460,8502544-8502612,8502725-8502790,
           8502885-8502963,8504270-8504390,8504486-8504581,
           8505403-8505515,8505612-8505689,8507777-8507893,
           8508194-8508293,8508463-8508563,8509093-8509110
          Length = 404

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
 Frame = +2

Query: 119 LREEQPFRLWV----LKHGQLMTS-SEVSAGWSHSASSLICSTSYGTHTLYTGRGPLSLR 283
           L ++ P  LW+    +  G  M S +E+S  W+   +++I + S+   ++Y+ +    + 
Sbjct: 212 LGQQVPLTLWLSLAPVVIGVSMASLTELSFNWTGFVNAMISNISFTLRSVYSKKAMTDMD 271

Query: 284 ASGFYIYI 307
           ++  Y YI
Sbjct: 272 STNLYAYI 279


>03_05_0036 + 20094462-20095296,20111755-20111822,20112265-20112402
          Length = 346

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 635 KWVTYTSNEDSHKPVLNLVIFGCYRKYGIYLLGV 736
           +WV +   E+ H P++N VI  C R+    L+G+
Sbjct: 139 QWVDWKYMEELHDPIINEVIEACARQNLKELMGL 172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,891,010
Number of Sequences: 37544
Number of extensions: 479788
Number of successful extensions: 1191
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)