Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40125
         (751 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38159| Best HMM Match : Peptidase_M28 (HMM E-Value=4.7e-09)         29   3.0  
SB_14570| Best HMM Match : Mab-21 (HMM E-Value=0.00069)                29   3.0  
SB_42838| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-39)                 28   7.0  
SB_32903| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_38159| Best HMM Match : Peptidase_M28 (HMM E-Value=4.7e-09)
          Length = 1049

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +2

Query: 149 VLKHGQLMTSSEVSAGWSHSASSLICSTSYGTHTLYTGRGPLSLRASG 292
           VL     +T   +  GWS  +   +CS+S G    Y  R  LSL ASG
Sbjct: 15  VLTPSLSLTGKSIYDGWSQWSFWNLCSSSCGQGRRYRYRFCLSLTASG 62


>SB_14570| Best HMM Match : Mab-21 (HMM E-Value=0.00069)
          Length = 639

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = -1

Query: 310 PNVYIKTGGAE*ERPSPSVQSVGTIRGRADEAGC*MRPTSRNFRAGHELTVLQHPK 143
           P+V+ + G     RP P    +  +     E GC + P  R  R G  LT+ Q+ K
Sbjct: 176 PDVWPEPGMDWLVRPRPGGWPLPELIQEIVELGCHLAPVGRGKRTGKTLTIFQYKK 231


>SB_42838| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-39)
          Length = 747

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 185 VSAGWSHSASSLICSTSYGTHTLYTGRGPLSLRAS 289
           ++ GW HS +  + +T  G HTL T   P+ L  +
Sbjct: 57  LTEGWCHSVNVRLTATKSGRHTL-TNAAPIKLHVT 90


>SB_32903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 765

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -1

Query: 373 PKITQN*IRASNFPHGLVCPTPNVYIKTGGAE 278
           PK T+  +RA   PH  V   P V   TGG E
Sbjct: 258 PKTTRKPVRAMETPHAEVLIQPKVTGATGGGE 289


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,145,657
Number of Sequences: 59808
Number of extensions: 535973
Number of successful extensions: 1382
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1382
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)