Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40125
         (751 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12290.1 68418.m01445 expressed protein similarity to NCA2 pr...    30   1.9  
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ...    28   5.8  
At3g50760.1 68416.m05558 glycosyl transferase family 8 protein c...    28   7.6  
At2g45300.1 68415.m05638 3-phosphoshikimate 1-carboxyvinyltransf...    28   7.6  
At2g32160.2 68415.m03931 expressed protein                             28   7.6  
At2g32160.1 68415.m03930 expressed protein                             28   7.6  
At1g43680.1 68414.m05018 hypothetical protein                          28   7.6  

>At5g12290.1 68418.m01445 expressed protein similarity to NCA2
           protein, yeast, PIR:S54389~Contains 'Homeobox' domain
           signature and profile AA305-328
          Length = 602

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 137 FRLWVLKHGQLMTSSEVSAGWSHSASSLICS 229
           F +W+L+H  LM SS++   W H A     S
Sbjct: 315 FSIWLLRHSSLMGSSDIE-NWVHDAKEATMS 344


>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
           repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
           sapiens}; similar to WD repeat protein Srw1
           -Schizosaccharomyces pombe,PID:d1023012
          Length = 475

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +3

Query: 243 PTLCTLGEGRSHSAPPVFIYTLGVGQTRPCGKLDALIQFWVIFGYSCSENKTREFFVLLY 422
           PT+  L     HS   +++     GQT   G  D  ++FW +F    S+++  E   L +
Sbjct: 410 PTMSKLATLTGHSYRVLYLAVSPDGQTIVTGAGDETLRFWNVFPSPKSQSRESEIGALSF 469


>At3g50760.1 68416.m05558 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 Glycosyl transferase
           family 8
          Length = 285

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 294 KPEARSESG-PRPVYRVWVPYEVEQMRLD 211
           KP  R + G P P+  +WVPY++ + R D
Sbjct: 253 KPWVRLDDGRPCPLDALWVPYDLLESRFD 281


>At2g45300.1 68415.m05638 3-phosphoshikimate
           1-carboxyvinyltransferase /
           5-enolpyruvylshikimate-3-phosphate / EPSP synthase
           nearly identical to SP|P05466
          Length = 520

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = -3

Query: 116 PEIIQNQTRWGERRSPLSVNNAILTKEH*PRISPWS 9
           P +I N ++  +R+SPLSV  ++ T++H PR  P S
Sbjct: 14  PSLISNLSKSSQRKSPLSV--SLKTQQH-PRAYPIS 46


>At2g32160.2 68415.m03931 expressed protein
          Length = 449

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +1

Query: 442 DFI-AFNNSSQASKWFTIISCLH-DTCTTIL 528
           DF+  FN SSQA  W  +++C   DT   I+
Sbjct: 325 DFVEVFNESSQAGMWDAVVTCFFIDTAHNII 355


>At2g32160.1 68415.m03930 expressed protein
          Length = 415

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +1

Query: 442 DFI-AFNNSSQASKWFTIISCLH-DTCTTIL 528
           DF+  FN SSQA  W  +++C   DT   I+
Sbjct: 325 DFVEVFNESSQAGMWDAVVTCFFIDTAHNII 355


>At1g43680.1 68414.m05018 hypothetical protein
          Length = 247

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 445 NLFINWIKYNNTKNSRV-LFS-LHEYPKITQN*IRASNFPH 329
           N    W +  N++NS +  +S LH++P ++ N   A N PH
Sbjct: 135 NSLNRWDQEINSQNSNISTYSPLHDFPVVSWNFYTAGNLPH 175


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,840,088
Number of Sequences: 28952
Number of extensions: 389359
Number of successful extensions: 851
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)