Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40124
         (560 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin pr...   138   2e-35
AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin pr...   138   2e-35
AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin pr...   127   7e-32
AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin pr...   124   4e-31
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    26   0.19 
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    26   0.19 
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    24   0.78 
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    24   0.78 
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    24   0.78 
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   2.4  

>AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin
           protein.
          Length = 76

 Score =  138 bits (335), Expect = 2e-35
 Identities = 67/69 (97%), Positives = 68/69 (98%)
 Frame = +3

Query: 9   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRILSDYNI 188
           QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGR LSDYNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61

Query: 189 QKESTLHLV 215
           QKESTLHLV
Sbjct: 62  QKESTLHLV 70


>AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin
           protein.
          Length = 685

 Score =  138 bits (335), Expect = 2e-35
 Identities = 67/69 (97%), Positives = 68/69 (98%)
 Frame = +3

Query: 9   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRILSDYNI 188
           QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGR LSDYNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61

Query: 189 QKESTLHLV 215
           QKESTLHLV
Sbjct: 62  QKESTLHLV 70



 Score =  138 bits (335), Expect = 2e-35
 Identities = 67/69 (97%), Positives = 68/69 (98%)
 Frame = +3

Query: 9   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRILSDYNI 188
           QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGR LSDYNI
Sbjct: 78  QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 137

Query: 189 QKESTLHLV 215
           QKESTLHLV
Sbjct: 138 QKESTLHLV 146



 Score =  138 bits (335), Expect = 2e-35
 Identities = 67/69 (97%), Positives = 68/69 (98%)
 Frame = +3

Query: 9   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRILSDYNI 188
           QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGR LSDYNI
Sbjct: 154 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 213

Query: 189 QKESTLHLV 215
           QKESTLHLV
Sbjct: 214 QKESTLHLV 222



 Score =  138 bits (335), Expect = 2e-35
 Identities = 67/69 (97%), Positives = 68/69 (98%)
 Frame = +3

Query: 9   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRILSDYNI 188
           QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGR LSDYNI
Sbjct: 230 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 289

Query: 189 QKESTLHLV 215
           QKESTLHLV
Sbjct: 290 QKESTLHLV 298



 Score =  138 bits (335), Expect = 2e-35
 Identities = 67/69 (97%), Positives = 68/69 (98%)
 Frame = +3

Query: 9   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRILSDYNI 188
           QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGR LSDYNI
Sbjct: 306 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 365

Query: 189 QKESTLHLV 215
           QKESTLHLV
Sbjct: 366 QKESTLHLV 374



 Score =  138 bits (335), Expect = 2e-35
 Identities = 67/69 (97%), Positives = 68/69 (98%)
 Frame = +3

Query: 9   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRILSDYNI 188
           QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGR LSDYNI
Sbjct: 458 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 517

Query: 189 QKESTLHLV 215
           QKESTLHLV
Sbjct: 518 QKESTLHLV 526



 Score =  138 bits (335), Expect = 2e-35
 Identities = 67/69 (97%), Positives = 68/69 (98%)
 Frame = +3

Query: 9   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRILSDYNI 188
           QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGR LSDYNI
Sbjct: 534 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 593

Query: 189 QKESTLHLV 215
           QKESTLHLV
Sbjct: 594 QKESTLHLV 602



 Score =  138 bits (335), Expect = 2e-35
 Identities = 67/69 (97%), Positives = 68/69 (98%)
 Frame = +3

Query: 9   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRILSDYNI 188
           QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGR LSDYNI
Sbjct: 610 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 669

Query: 189 QKESTLHLV 215
           QKESTLHLV
Sbjct: 670 QKESTLHLV 678



 Score =  136 bits (329), Expect = 1e-34
 Identities = 66/69 (95%), Positives = 67/69 (97%)
 Frame = +3

Query: 9   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRILSDYNI 188
           QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQR IFAGKQLEDGR LSDYNI
Sbjct: 382 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLSDYNI 441

Query: 189 QKESTLHLV 215
           QKESTLHLV
Sbjct: 442 QKESTLHLV 450


>AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin
           protein.
          Length = 64

 Score =  127 bits (306), Expect = 7e-32
 Identities = 61/63 (96%), Positives = 62/63 (98%)
 Frame = +3

Query: 9   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRILSDYNI 188
           QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGR LSDYNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61

Query: 189 QKE 197
           QKE
Sbjct: 62  QKE 64


>AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin
           protein.
          Length = 112

 Score =  124 bits (300), Expect = 4e-31
 Identities = 60/63 (95%), Positives = 61/63 (96%)
 Frame = +3

Query: 9   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRILSDYNI 188
           QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQR IFAGKQLEDGR LSDYNI
Sbjct: 50  QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLSDYNI 109

Query: 189 QKE 197
           QKE
Sbjct: 110 QKE 112



 Score = 86.2 bits (204), Expect = 2e-19
 Identities = 40/42 (95%), Positives = 41/42 (97%)
 Frame = +3

Query: 90  KIQDKEGIPPNQQRLIFAGKQLEDGRILSDYNIQKESTLHLV 215
           KIQDKEGIPP+QQRLIFAGKQLEDGR LSDYNIQKESTLHLV
Sbjct: 1   KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 42


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 26.2 bits (55), Expect = 0.19
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -1

Query: 515 TAARAVPYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHR 402
           T + AVP  L GTY   ++F    +V L  VV   HHR
Sbjct: 266 TTSDAVP--LIGTYFNCIMFMVASSVVLTVVVLNYHHR 301


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 26.2 bits (55), Expect = 0.19
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -1

Query: 515 TAARAVPYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHR 402
           T + AVP  L GTY   ++F    +V L  VV   HHR
Sbjct: 266 TTSDAVP--LIGTYFNCIMFMVASSVVLTVVVLNYHHR 301


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 0.78
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 503 AVPYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHR 402
           A+P  L GTY   ++F    +V L  VV   HHR
Sbjct: 270 AIP--LLGTYFNCIMFMVASSVVLTVVVLNYHHR 301


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 0.78
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 503 AVPYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHR 402
           A+P  L GTY   ++F    +V L  VV   HHR
Sbjct: 270 AIP--LLGTYFNCIMFMVASSVVLTVVVLNYHHR 301


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 0.78
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 503 AVPYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHR 402
           A+P  L GTY   ++F    +V L  VV   HHR
Sbjct: 270 AIP--LLGTYFNCIMFMVASSVVLTVVVLNYHHR 301


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -3

Query: 231 HHEASTPGGGWIPSGYCSPR 172
           HH    P GG  P G   PR
Sbjct: 63  HHYGGPPSGGQPPQGMPYPR 82


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,434
Number of Sequences: 336
Number of extensions: 2673
Number of successful extensions: 19
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13786212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)