Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40124
(560 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 135 5e-33
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 135 5e-33
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 133 2e-32
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 133 2e-32
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 133 2e-32
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 83 2e-17
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 44 1e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 39 6e-04
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 38 8e-04
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 30 0.20
SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier Hub1|Schi... 27 1.9
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 27 2.5
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 27 2.5
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 25 5.8
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 25 5.8
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 135 bits (326), Expect = 5e-33
Identities = 76/147 (51%), Positives = 83/147 (56%)
Frame = +3
Query: 9 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRILSDYNI 188
QIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGR LSDYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 189 QKESTLHLVXXXXXXXXXXXXXITPHPXXXXXXXXXXXXXXXGFXXXXXXXXXXXCXXXX 368
QKESTLHLV P +
Sbjct: 62 QKESTLHLVLRLRGGGKKRKKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVK--RLRR 119
Query: 369 XXXXXXXGVFMAVMEDRHYCGKCHSTM 449
FMA +DR YCG+CH T+
Sbjct: 120 ECPNCGASTFMANHKDRLYCGRCHLTL 146
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/47 (38%), Positives = 30/47 (63%)
Frame = +2
Query: 245 QEEDYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLQRECTSEQCG 385
+++ Y+TP LAVL++YKV+++G + RL+REC + CG
Sbjct: 81 KKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRRECPN--CG 125
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 135 bits (326), Expect = 5e-33
Identities = 76/147 (51%), Positives = 83/147 (56%)
Frame = +3
Query: 9 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRILSDYNI 188
QIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGR LSDYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 189 QKESTLHLVXXXXXXXXXXXXXITPHPXXXXXXXXXXXXXXXGFXXXXXXXXXXXCXXXX 368
QKESTLHLV P +
Sbjct: 62 QKESTLHLVLRLRGGGKKRKKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVK--RLRR 119
Query: 369 XXXXXXXGVFMAVMEDRHYCGKCHSTM 449
FMA +DR YCG+CH T+
Sbjct: 120 ECPNCGASTFMANHKDRLYCGRCHLTL 146
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/47 (38%), Positives = 30/47 (63%)
Frame = +2
Query: 245 QEEDYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLQRECTSEQCG 385
+++ Y+TP LAVL++YKV+++G + RL+REC + CG
Sbjct: 81 KKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRRECPN--CG 125
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 133 bits (321), Expect = 2e-32
Identities = 64/69 (92%), Positives = 67/69 (97%)
Frame = +3
Query: 9 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRILSDYNI 188
QIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGR LSDYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 189 QKESTLHLV 215
QKESTLHLV
Sbjct: 62 QKESTLHLV 70
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 133 bits (321), Expect = 2e-32
Identities = 64/69 (92%), Positives = 67/69 (97%)
Frame = +3
Query: 9 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRILSDYNI 188
QIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGR LSDYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 189 QKESTLHLV 215
QKESTLHLV
Sbjct: 62 QKESTLHLV 70
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 133 bits (321), Expect = 2e-32
Identities = 64/69 (92%), Positives = 67/69 (97%)
Frame = +3
Query: 9 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRILSDYNI 188
QIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGR LSDYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 189 QKESTLHLV 215
QKESTLHLV
Sbjct: 62 QKESTLHLV 70
Score = 133 bits (321), Expect = 2e-32
Identities = 64/69 (92%), Positives = 67/69 (97%)
Frame = +3
Query: 9 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRILSDYNI 188
QIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGR LSDYNI
Sbjct: 78 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 137
Query: 189 QKESTLHLV 215
QKESTLHLV
Sbjct: 138 QKESTLHLV 146
Score = 133 bits (321), Expect = 2e-32
Identities = 64/69 (92%), Positives = 67/69 (97%)
Frame = +3
Query: 9 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRILSDYNI 188
QIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGR LSDYNI
Sbjct: 154 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 213
Query: 189 QKESTLHLV 215
QKESTLHLV
Sbjct: 214 QKESTLHLV 222
Score = 133 bits (321), Expect = 2e-32
Identities = 64/69 (92%), Positives = 67/69 (97%)
Frame = +3
Query: 9 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRILSDYNI 188
QIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGR LSDYNI
Sbjct: 230 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 289
Query: 189 QKESTLHLV 215
QKESTLHLV
Sbjct: 290 QKESTLHLV 298
Score = 133 bits (321), Expect = 2e-32
Identities = 64/69 (92%), Positives = 67/69 (97%)
Frame = +3
Query: 9 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRILSDYNI 188
QIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGR LSDYNI
Sbjct: 306 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 365
Query: 189 QKESTLHLV 215
QKESTLHLV
Sbjct: 366 QKESTLHLV 374
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 83.4 bits (197), Expect = 2e-17
Identities = 35/68 (51%), Positives = 52/68 (76%)
Frame = +3
Query: 12 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRILSDYNIQ 191
I VKTLTGK I L+++P+D + +K ++++KEGIPP+QQRLI+AGKQ+ D + Y+++
Sbjct: 3 IKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLE 62
Query: 192 KESTLHLV 215
S LHLV
Sbjct: 63 GGSVLHLV 70
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 44.4 bits (100), Expect = 1e-05
Identities = 20/58 (34%), Positives = 34/58 (58%)
Frame = +3
Query: 33 GKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRILSDYNIQKESTL 206
GK LE+EP++T +K ++ +PP +Q++I G QL+D +L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 38.7 bits (86), Expect = 6e-04
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = +3
Query: 18 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRILSDYNIQKE 197
+K + + V+ ++ +K I I +QRLI+AG+ L+D L Y IQ
Sbjct: 8 IKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDG 67
Query: 198 STLHLV 215
++HLV
Sbjct: 68 HSIHLV 73
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 38.3 bits (85), Expect = 8e-04
Identities = 16/54 (29%), Positives = 32/54 (59%)
Frame = +3
Query: 36 KTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRILSDYNIQKE 197
K + +V I +K KIQ ++ +Q+LI++G+ L D + + +YNI+++
Sbjct: 12 KFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 30.3 bits (65), Expect = 0.20
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 527 NPSYTAARAVPYRLEGTYLFVVVFEDHRAVTLPAV 423
NP+YT + Y L TYL F++HR + AV
Sbjct: 144 NPAYTNSHQNSYSLNETYLSYDFFDNHRGASSSAV 178
>SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier
Hub1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 73
Score = 27.1 bits (57), Expect = 1.9
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = +3
Query: 33 GKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRILSDYNIQKESTLHL 212
GK + ++ P DT+ + K + + G P + L +D L+DY I +L +
Sbjct: 11 GKKVRVKCMPDDTVGDFKKLVAAQTGTDPRRIVLKKWHSVFKDNITLADYEIHDGMSLEM 70
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 26.6 bits (56), Expect = 2.5
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = +2
Query: 344 IHRLQRECTSEQCGRRSVHGGDGGPSLLREVSQHDGLQRRRQINKS 481
+HR+ R + + GR G+G +L+ V ++ Q + +N++
Sbjct: 589 LHRVGRTARAGRSGRAITLAGEGDRKVLKGVFKNSSAQNTKLVNRN 634
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 26.6 bits (56), Expect = 2.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 195 PSGYCSPRGYVHLPAAFQQRSTSVDWEGF 109
PS + PRG V+ P+ ++R + + GF
Sbjct: 17 PSSFLKPRGLVYRPSQIRRRVSLLSLSGF 45
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.4 bits (53), Expect = 5.8
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 368 TSEQCGRRSVHGGDGGPSLLREVSQHDGLQRRRQIN 475
T CG + DG L+ SQHDG++ R ++N
Sbjct: 237 TCNLCGSENSFNDDGFNPLVG--SQHDGVESRPELN 270
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 5.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 382 RPPECSWR*WRTVTTAGSVTARWSS 456
RPP+ + R +T G++TARW +
Sbjct: 283 RPPQATVVIGRQITRFGTLTARWKT 307
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,235,867
Number of Sequences: 5004
Number of extensions: 44232
Number of successful extensions: 109
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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