Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40123
(703 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 111 5e-25
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 106 2e-23
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 98 7e-21
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 82 5e-16
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.39
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 31 0.68
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 31 1.2
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 31 1.2
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 30 2.1
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_13245| Best HMM Match : Ion_trans (HMM E-Value=3.3e-25) 28 8.4
SB_9892| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013) 28 8.4
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 111 bits (267), Expect = 5e-25
Identities = 52/95 (54%), Positives = 68/95 (71%), Gaps = 2/95 (2%)
Frame = +1
Query: 262 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 441
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 442 TREHALLAFTLGVKQLIVGVNK--RIPLNHHTVSP 540
TREHA+L +LGV QLIV +NK + L +H P
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 106 bits (255), Expect = 2e-23
Identities = 47/114 (41%), Positives = 73/114 (64%)
Frame = +1
Query: 259 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 438
T+++ F+T + T++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + G
Sbjct: 209 TVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGG 268
Query: 439 QTREHALLAFTLGVKQLIVGVNKRIPLNHHTVSPDLRKFKKEVSSYIKKIGYKP 600
QTREHA+LA T GVK L++ VNK + K +++ ++KK+G+ P
Sbjct: 269 QTREHAMLAKTAGVKHLVILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/40 (42%), Positives = 28/40 (70%)
Frame = +3
Query: 132 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 251
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER+
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 205
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.9 bits (233), Expect = 7e-21
Identities = 51/74 (68%), Positives = 54/74 (72%)
Frame = +3
Query: 48 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 227
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+ S +
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEVLCFS-SCLLFM 59
Query: 228 DKLKAERESYHNRY 269
KLK E H Y
Sbjct: 60 SKLKFELPCTHKIY 73
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 81.8 bits (193), Expect = 5e-16
Identities = 36/38 (94%), Positives = 37/38 (97%)
Frame = +1
Query: 256 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 369
ITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 23 ITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +3
Query: 192 MGKGSFKYAWVLDKLKAERE 251
MGKGSFKYAWVLDKLKAERE
Sbjct: 1 MGKGSFKYAWVLDKLKAERE 20
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 32.7 bits (71), Expect = 0.30
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 304 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 408
+T ID PGH F G + D VL+VAA G
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 32.3 bits (70), Expect = 0.39
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +3
Query: 48 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 143
M K+ N+ VI HVD GKST T L+ K G
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 298 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 408
+ + +ID+PGH DF + D A+++V +G
Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 31.5 bits (68), Expect = 0.68
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +1
Query: 241 LSVSRITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 393
L+ RI + +F+ + IID PGH F G+S D A+L+V
Sbjct: 659 LNAIRIQTKMVKEEFDIKIPGLLIIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +1
Query: 313 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 492
+D PGH + M+ G + D A+L++A QT EH + +K ++
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122
Query: 493 VGVNK 507
+ NK
Sbjct: 123 ILQNK 127
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +1
Query: 256 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 408
I++ ++ F + I+D PGH+DF ++ + D ++++ G
Sbjct: 65 ISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = +1
Query: 256 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 399
IT I + + + +D PGH F G D +++VAA
Sbjct: 124 ITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 63 THINIVVIGHVDSGKSTTTGHLIY 134
T I + V+G+V+SGKST G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 72 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 170
N ++ HVD GKST L+ G I K + K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975
>SB_13245| Best HMM Match : Ion_trans (HMM E-Value=3.3e-25)
Length = 816
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -3
Query: 698 LHLPSLGTKAFWLKAPTCCLRAIQKWARKRQQLGL*PIFLMYE--DTSFLNFLKSG 537
+HL L ++ + + CLR I R R+Q L F+MYE + L+ +K G
Sbjct: 470 MHLTVLSNSFLFMDSESSCLRGIS--MRMRRQYHLPGHFIMYEGDEVDTLHLIKRG 523
>SB_9892| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013)
Length = 663
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 165 EKFEKEAQEMGKGSFKYAWVLDKLKAERESY 257
+++ K +EM + K W +KLKAE E++
Sbjct: 42 KEYSKLKEEMNSDAVKVKWAQNKLKAELEAH 72
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,641,957
Number of Sequences: 59808
Number of extensions: 480341
Number of successful extensions: 1281
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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