Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40123
(703 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 180 1e-45
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 180 1e-45
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 158 4e-39
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 146 2e-35
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 139 2e-33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 113 1e-25
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 113 1e-25
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 109 2e-24
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 71 8e-13
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 71 8e-13
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 66 2e-11
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 66 2e-11
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 66 2e-11
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 38 0.005
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 34 0.086
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.15
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.20
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.26
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.26
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 32 0.35
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 32 0.46
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 32 0.46
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 31 0.60
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 31 0.60
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.80
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.80
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 31 0.80
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 30 1.8
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 7.4
AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical ... 28 7.4
AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical ... 28 7.4
AC024791-38|AAY55888.1| 246|Caenorhabditis elegans Hypothetical... 28 7.4
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 27 9.8
U67949-9|AAM69108.1| 486|Caenorhabditis elegans Hypothetical pr... 27 9.8
U67949-8|AAD32274.1| 626|Caenorhabditis elegans Hypothetical pr... 27 9.8
AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical ... 27 9.8
AC024817-53|AAP13744.1| 549|Caenorhabditis elegans Hypothetical... 27 9.8
AC024817-52|AAF59568.4| 611|Caenorhabditis elegans Hypothetical... 27 9.8
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 180 bits (437), Expect = 1e-45
Identities = 88/120 (73%), Positives = 93/120 (77%)
Frame = +1
Query: 256 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKN 435
ITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKN
Sbjct: 71 ITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKN 130
Query: 436 GQTREHALLAFTLGVKQLIVGVNKRIPLNHHTVSPDLRKFKKEVSSYIKKIGYKPSCCRF 615
GQTREHALLA TLGVKQLIV NK + EVS +IKKIGY P F
Sbjct: 131 GQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPF 190
Score = 146 bits (353), Expect = 2e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +3
Query: 48 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 227
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 228 DKLKAERE 251
DKLKAERE
Sbjct: 61 DKLKAERE 68
Score = 56.4 bits (130), Expect = 2e-08
Identities = 23/37 (62%), Positives = 30/37 (81%)
Frame = +2
Query: 581 RRLATNPAAVAFVPISGWHGDNMLEPSTKMPWFQGMA 691
+++ NP AV FVPISG++GDNMLE S+ MPWF+G A
Sbjct: 179 KKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWA 215
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 180 bits (437), Expect = 1e-45
Identities = 88/120 (73%), Positives = 93/120 (77%)
Frame = +1
Query: 256 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKN 435
ITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKN
Sbjct: 71 ITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKN 130
Query: 436 GQTREHALLAFTLGVKQLIVGVNKRIPLNHHTVSPDLRKFKKEVSSYIKKIGYKPSCCRF 615
GQTREHALLA TLGVKQLIV NK + EVS +IKKIGY P F
Sbjct: 131 GQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPF 190
Score = 146 bits (353), Expect = 2e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +3
Query: 48 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 227
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 228 DKLKAERE 251
DKLKAERE
Sbjct: 61 DKLKAERE 68
Score = 56.4 bits (130), Expect = 2e-08
Identities = 23/37 (62%), Positives = 30/37 (81%)
Frame = +2
Query: 581 RRLATNPAAVAFVPISGWHGDNMLEPSTKMPWFQGMA 691
+++ NP AV FVPISG++GDNMLE S+ MPWF+G A
Sbjct: 179 KKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWA 215
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 158 bits (383), Expect = 4e-39
Identities = 73/79 (92%), Positives = 77/79 (97%)
Frame = +1
Query: 256 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKN 435
ITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKN
Sbjct: 71 ITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKN 130
Query: 436 GQTREHALLAFTLGVKQLI 492
GQTREHALLA TLGVKQL+
Sbjct: 131 GQTREHALLAQTLGVKQLV 149
Score = 146 bits (353), Expect = 2e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +3
Query: 48 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 227
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 228 DKLKAERE 251
DKLKAERE
Sbjct: 61 DKLKAERE 68
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 146 bits (353), Expect = 2e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +3
Query: 48 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 227
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 228 DKLKAERE 251
DKLKAERE
Sbjct: 61 DKLKAERE 68
Score = 99 bits (238), Expect(2) = 8e-24
Identities = 44/47 (93%), Positives = 47/47 (100%)
Frame = +1
Query: 256 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 396
ITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 71 ITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
Score = 56.4 bits (130), Expect = 2e-08
Identities = 23/37 (62%), Positives = 30/37 (81%)
Frame = +2
Query: 581 RRLATNPAAVAFVPISGWHGDNMLEPSTKMPWFQGMA 691
+++ NP AV FVPISG++GDNMLE S+ MPWF+G A
Sbjct: 145 KKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWA 181
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +3
Query: 510 DSTEPPYSEPRFEEI 554
DSTEPP+SE RF EI
Sbjct: 122 DSTEPPFSEARFTEI 136
Score = 28.3 bits (60), Expect(2) = 8e-24
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = +1
Query: 487 LIVGVNKRIPLNHHTVSPDLRKFKKEVSSYIKKIGYKPSCCRF 615
L+V NK + EVS +IKKIGY P F
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPF 156
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 139 bits (336), Expect = 2e-33
Identities = 63/69 (91%), Positives = 65/69 (94%)
Frame = +3
Query: 48 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 227
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 228 DKLKAERES 254
DKLK + +
Sbjct: 61 DKLKVTKSA 69
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 113 bits (272), Expect = 1e-25
Identities = 53/84 (63%), Positives = 63/84 (75%)
Frame = +1
Query: 256 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKN 435
+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G
Sbjct: 234 VTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENG 293
Query: 436 GQTREHALLAFTLGVKQLIVGVNK 507
GQT+EHALL +LGV QLIV VNK
Sbjct: 294 GQTKEHALLLRSLGVTQLIVAVNK 317
Score = 83.0 bits (196), Expect = 2e-16
Identities = 36/65 (55%), Positives = 48/65 (73%)
Frame = +3
Query: 57 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 236
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 237 KAERE 251
+ ERE
Sbjct: 227 EEERE 231
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 113 bits (272), Expect = 1e-25
Identities = 53/84 (63%), Positives = 63/84 (75%)
Frame = +1
Query: 256 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKN 435
+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G
Sbjct: 252 VTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENG 311
Query: 436 GQTREHALLAFTLGVKQLIVGVNK 507
GQT+EHALL +LGV QLIV VNK
Sbjct: 312 GQTKEHALLLRSLGVTQLIVAVNK 335
Score = 83.0 bits (196), Expect = 2e-16
Identities = 36/65 (55%), Positives = 48/65 (73%)
Frame = +3
Query: 57 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 236
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 237 KAERE 251
+ ERE
Sbjct: 245 EEERE 249
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 109 bits (262), Expect = 2e-24
Identities = 51/117 (43%), Positives = 80/117 (68%), Gaps = 3/117 (2%)
Frame = +1
Query: 259 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 438
T+++ FET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A GEFE G + G
Sbjct: 174 TVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFETGFDRGG 233
Query: 439 QTREHALLAFTLGVKQLIVGVNKRIPLNHHTVSPDLRKFKK---EVSSYIKKIGYKP 600
QTREH++L T GVK L++ VNK ++ TV + +FK+ +++ +++K+G+ P
Sbjct: 234 QTREHSMLVKTAGVKHLVILVNK---MDDPTVKWEEERFKEIEGKLTPFLRKLGFNP 287
Score = 79.0 bits (186), Expect = 3e-15
Identities = 34/67 (50%), Positives = 48/67 (71%)
Frame = +3
Query: 51 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 230
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 231 KLKAERE 251
ERE
Sbjct: 164 TNDEERE 170
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 70.9 bits (166), Expect = 8e-13
Identities = 39/84 (46%), Positives = 52/84 (61%)
Frame = +1
Query: 256 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKN 435
ITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E
Sbjct: 94 ITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME------ 147
Query: 436 GQTREHALLAFTLGVKQLIVGVNK 507
QT+EH +LA +GVK + + +NK
Sbjct: 148 -QTKEHLILAKQVGVKNMAIFINK 170
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 60 KTHINIVVIGHVDSGKSTTT 119
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 70.9 bits (166), Expect = 8e-13
Identities = 39/84 (46%), Positives = 52/84 (61%)
Frame = +1
Query: 256 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKN 435
ITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E
Sbjct: 94 ITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME------ 147
Query: 436 GQTREHALLAFTLGVKQLIVGVNK 507
QT+EH +LA +GVK + + +NK
Sbjct: 148 -QTKEHLILAKQVGVKNMAIFINK 170
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 60 KTHINIVVIGHVDSGKSTTT 119
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 66.1 bits (154), Expect = 2e-11
Identities = 39/86 (45%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKN 435
ITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 98 ITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP------ 151
Query: 436 GQTREHALLAFTLGV--KQLIVGVNK 507
QTREH LLA +GV ++V +NK
Sbjct: 152 -QTREHLLLARQVGVPLDNIVVFMNK 176
Score = 37.9 bits (84), Expect = 0.007
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +3
Query: 54 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 224
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 104
Query: 225 LDKLKAERESYH 260
L+ A+R H
Sbjct: 105 LEYETAKRHYAH 116
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 66.1 bits (154), Expect = 2e-11
Identities = 39/86 (45%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKN 435
ITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 99 ITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP------ 152
Query: 436 GQTREHALLAFTLGV--KQLIVGVNK 507
QTREH LLA +GV ++V +NK
Sbjct: 153 -QTREHLLLARQVGVPLDNIVVFMNK 177
Score = 37.9 bits (84), Expect = 0.007
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +3
Query: 54 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 224
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 225 LDKLKAERESYH 260
L+ A+R H
Sbjct: 106 LEYETAKRHYAH 117
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 66.1 bits (154), Expect = 2e-11
Identities = 39/86 (45%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKN 435
ITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 99 ITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP------ 152
Query: 436 GQTREHALLAFTLGV--KQLIVGVNK 507
QTREH LLA +GV ++V +NK
Sbjct: 153 -QTREHLLLARQVGVPLDNIVVFMNK 177
Score = 37.9 bits (84), Expect = 0.007
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +3
Query: 54 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 224
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 225 LDKLKAERESYH 260
L+ A+R H
Sbjct: 106 LEYETAKRHYAH 117
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 40.3 bits (90), Expect = 0.001
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Frame = +1
Query: 247 VSRITIDIALWKFET-SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAG 423
+ R T+D+ + S + +ID PGH I+ ++ ++ D A++I+ + AG
Sbjct: 54 IRRNTLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAG 108
Query: 424 ISKNGQTREHALLAFTLGVKQLIVGVNKRIPLNHHTVSPDLRKFKKEVSS 573
I QT EH LLA ++I+ +NK +S +K +K + S
Sbjct: 109 IQP--QTAEHLLLASKFCPNRVIIVLNKCDLAEKSKISESAKKVRKGLKS 156
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 69 INIVVIGHVDSGKSTTT 119
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 38.3 bits (85), Expect = 0.005
Identities = 32/85 (37%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 ITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 432
IT I + E +K VT +D PGH F G AD VL+VAA G E
Sbjct: 189 ITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKE----- 243
Query: 433 NGQTREHALLAFTLGVKQLIVGVNK 507
QT + A V QL+V VNK
Sbjct: 244 --QTAQSIKFAKDANV-QLVVAVNK 265
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 34.3 bits (75), Expect = 0.086
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +3
Query: 72 NIVVIGHVDSGKSTTTGHLIYKCGGI 149
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 33.5 bits (73), Expect = 0.15
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -3
Query: 506 LFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 378
LF PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 72 NIVVIGHVDSGKSTTTGHLIYKCGGID 152
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +1
Query: 256 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 408
ITI A + + IID PGH DF + D AVL++ G G
Sbjct: 98 ITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG 147
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 48 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 143
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +1
Query: 259 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 408
T+++ K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 48 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 143
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +1
Query: 259 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 408
T+++ K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 72 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQ 188
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
Score = 31.9 bits (69), Expect = 0.46
Identities = 23/70 (32%), Positives = 33/70 (47%)
Frame = +1
Query: 298 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG 477
Y + +ID PGH DF + + D +L+VAA G QT + LAF
Sbjct: 102 YLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG-------VQAQTIANFWLAFEKN 154
Query: 478 VKQLIVGVNK 507
+ Q+I +NK
Sbjct: 155 I-QIIPVINK 163
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 31.9 bits (69), Expect = 0.46
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 150 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERESY 257
+KR ++ EKE + F Y LDK+K ER+ Y
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERDCY 307
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 31.9 bits (69), Expect = 0.46
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 150 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERESY 257
+KR ++ EKE + F Y LDK+K ER+ Y
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERDCY 242
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 31.5 bits (68), Expect = 0.60
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +1
Query: 244 SVSRITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 408
S+ + I + Y + IID PGH +F M AD V++V A G
Sbjct: 183 SIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 31.5 bits (68), Expect = 0.60
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +1
Query: 244 SVSRITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 408
S+ + I + Y + IID PGH +F M AD V++V A G
Sbjct: 58 SIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.80
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 24 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 134
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.80
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 24 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 134
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 31.1 bits (67), Expect = 0.80
Identities = 19/69 (27%), Positives = 30/69 (43%)
Frame = +1
Query: 301 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 480
+V+ +D PGH + M+ G + D A L+VA QT EH + +
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNEP------CPQPQTSEHLAAVEIMQL 181
Query: 481 KQLIVGVNK 507
L++ NK
Sbjct: 182 NHLMILQNK 190
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 310 IIDAPGHRDFIKNMITGTSQADCAVLIV 393
IID PGH F G+S D A+L+V
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV 580
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 69 INIVVIGHVDSGKSTTT 119
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +1
Query: 304 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 399
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
>AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical
protein Y59A8B.9 protein.
Length = 187
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +3
Query: 144 GIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERESYHNRYCSLEV 284
G+D T K ++E +E+ + + V+ L+ ER+ Y ++ ++EV
Sbjct: 98 GVDMATFNKLKEELEEVTRQLTESDNVIASLEKERDFYFSKLRTIEV 144
>AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical
protein Y59A8B.7 protein.
Length = 316
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +3
Query: 144 GIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERESYHNRYCSLEV 284
G+D T K ++E +E+ + + V+ L+ ER+ Y ++ ++EV
Sbjct: 227 GVDMATFNKLKEELEEVTRQLTESDNVIASLEKERDFYFSKLRTIEV 273
>AC024791-38|AAY55888.1| 246|Caenorhabditis elegans Hypothetical
protein Y47G6A.32 protein.
Length = 246
Score = 27.9 bits (59), Expect = 7.4
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = -2
Query: 387 EHS-AISLRGSCDHVLDEISVSRSINDGNIVLASFELPESNIDCDTTHAQPLVCPIPKHI 211
EH ++++ CD V E S +D N +L S E PE + +T V + H
Sbjct: 104 EHGDSVAVNPHCDGVTFEGITSTDFDDSNCLLVSCE-PECQFNGPSTQHSSGVLSVLIHR 162
Query: 210 *RILYPFPGPPSRTSRWYV 154
R P PS T Y+
Sbjct: 163 IRNETTTPPTPSTTKSSYI 181
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 304 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 393
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 304 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 393
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>U67949-9|AAM69108.1| 486|Caenorhabditis elegans Hypothetical
protein F55A4.8b protein.
Length = 486
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -3
Query: 560 FLNFLKSGLTVWWFS 516
FLNFL SG T +WFS
Sbjct: 169 FLNFLPSGNTFFWFS 183
>U67949-8|AAD32274.1| 626|Caenorhabditis elegans Hypothetical
protein F55A4.8a protein.
Length = 626
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -3
Query: 560 FLNFLKSGLTVWWFS 516
FLNFL SG T +WFS
Sbjct: 309 FLNFLPSGNTFFWFS 323
>AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical
protein F14D2.15 protein.
Length = 299
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Frame = -2
Query: 489 ELFDTEGESEQGMLTGLTVLRDTSFEF-----TGTGSYDEHSAISLRGSCDH--VLDEIS 331
E + +E E G+ L V RD F + +GTGS + H ++R DH + +
Sbjct: 24 EHYTSEEEDHFGIKWWLRVTRDDQFLYVDLGKSGTGSTNFHGNFNVRVESDHGVISENFK 83
Query: 330 VSRSINDGNI 301
S S +D I
Sbjct: 84 FSGSKSDAEI 93
>AC024817-53|AAP13744.1| 549|Caenorhabditis elegans Hypothetical
protein Y54G2A.26b protein.
Length = 549
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 486 AHRRSKQKDSTEPPYSEPRFEEIQEGSILIHQEDW 590
AHRR K D + P YS E++ +GS+ D+
Sbjct: 124 AHRRKKHNDLSSPRYSSNSNEDV-DGSVFPDMADF 157
>AC024817-52|AAF59568.4| 611|Caenorhabditis elegans Hypothetical
protein Y54G2A.26a protein.
Length = 611
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 486 AHRRSKQKDSTEPPYSEPRFEEIQEGSILIHQEDW 590
AHRR K D + P YS E++ +GS+ D+
Sbjct: 186 AHRRKKHNDLSSPRYSSNSNEDV-DGSVFPDMADF 219
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,719,085
Number of Sequences: 27780
Number of extensions: 357443
Number of successful extensions: 1158
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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