Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40122
         (708 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CBC05 Cluster: sodium/hydrogen exchanger 3 fami...    36   0.98 
UniRef50_A2E446 Cluster: Putative uncharacterized protein; n=1; ...    34   3.9  
UniRef50_A5K948 Cluster: Putative uncharacterized protein; n=4; ...    33   6.9  

>UniRef50_UPI00006CBC05 Cluster: sodium/hydrogen exchanger 3 family
           protein; n=1; Tetrahymena thermophila SB210|Rep:
           sodium/hydrogen exchanger 3 family protein - Tetrahymena
           thermophila SB210
          Length = 1177

 Score = 35.9 bits (79), Expect = 0.98
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -3

Query: 679 RTQFIYISIKLFYIEYEKQNSARQQLNKKLYNISHIH-SLFLEFTAFSLEL 530
           R+  IY+   L Y E ++ N  ++Q+NKKL  I HI  S F +F   +L L
Sbjct: 565 RSAVIYLIANLNYQEIQQINQYKKQINKKLKKIYHIRMSFFDDFYGITLSL 615


>UniRef50_A2E446 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 1690

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 19/50 (38%), Positives = 30/50 (60%)
 Frame = -3

Query: 667 IYISIKLFYIEYEKQNSARQQLNKKLYNISHIHSLFLEFTAFSLELTIFV 518
           + +SI LF  +Y +  +A +  N KL N++   S+F EFT FS E+ I +
Sbjct: 116 VLLSISLFNSQYAQ--NAMEYFNAKLQNMTD-KSIFTEFTVFSYEVAIMM 162


>UniRef50_A5K948 Cluster: Putative uncharacterized protein; n=4;
           Plasmodium|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 1121

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 13/44 (29%), Positives = 27/44 (61%)
 Frame = -2

Query: 485 TFFCVNQVQNNIKNIMTYSVK*CNLINLANKVTMLFIVVKAAKY 354
           TFF   ++ +N++NI    ++ C L ++ NK+++LF + K   +
Sbjct: 722 TFFIEKRIMSNVENIENGEIEECTLQDVQNKLSILFDINKQLNF 765


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 542,644,309
Number of Sequences: 1657284
Number of extensions: 8737836
Number of successful extensions: 20278
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20278
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)