BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV40122 (708 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_8666| Best HMM Match : Flagellar_rod (HMM E-Value=2.5) 28 6.5 SB_37987| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5 >SB_8666| Best HMM Match : Flagellar_rod (HMM E-Value=2.5) Length = 895 Score = 28.3 bits (60), Expect = 6.5 Identities = 18/61 (29%), Positives = 28/61 (45%) Frame = -2 Query: 434 YSVK*CNLINLANKVTMLFIVVKAAKYHFLLCLSSVFCTCLLAIFSCYR*KHLGYFFLFL 255 YSV L+ T +VV + LL + S F CLL ++S + + LG + F Sbjct: 628 YSVFTRRLLGGYTVFTRRLLVVYSTVTRCLLDVYSAFTRCLLGVYSMFTRRLLGVYLTFT 687 Query: 254 K 252 + Sbjct: 688 R 688 >SB_37987| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1295 Score = 28.3 bits (60), Expect = 6.5 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = -2 Query: 371 VKAAKYHFLLCLSSVFCTCLLAIFSCY 291 V++ K+ F + +S+ C CL + SCY Sbjct: 1049 VRSIKFGFYILISTHICACLWFVESCY 1075 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,754,802 Number of Sequences: 59808 Number of extensions: 265207 Number of successful extensions: 669 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 643 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 669 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1865706635 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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