BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV40122 (708 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z99283-1|CAB16536.2| 414|Caenorhabditis elegans Hypothetical pr... 28 7.5 U41528-3|AAK39170.2| 594|Caenorhabditis elegans Kinesin-like pr... 28 7.5 AL117193-10|CAB60304.1| 337|Caenorhabditis elegans Hypothetical... 28 7.5 AF026209-13|AAB71271.2| 351|Caenorhabditis elegans Seven tm rec... 28 7.5 AF000299-3|AAW88403.1| 342|Caenorhabditis elegans Serpentine re... 27 9.9 AF000299-2|AAC47981.2| 324|Caenorhabditis elegans Serpentine re... 27 9.9 >Z99283-1|CAB16536.2| 414|Caenorhabditis elegans Hypothetical protein Y70C5C.2 protein. Length = 414 Score = 27.9 bits (59), Expect = 7.5 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%) Frame = +3 Query: 570 WMCEMLYNFLFNCCRAL--FCFSYSI*KSFIDM*MNCVLQC 686 ++CE+ F +C FC+SY+ SF+ NC QC Sbjct: 146 FVCELPITFEDDCSNNYNGFCYSYNPPASFVRAQQNCENQC 186 >U41528-3|AAK39170.2| 594|Caenorhabditis elegans Kinesin-like protein protein 8 protein. Length = 594 Score = 27.9 bits (59), Expect = 7.5 Identities = 15/33 (45%), Positives = 20/33 (60%) Frame = -3 Query: 628 KQNSARQQLNKKLYNISHIHSLFLEFTAFSLEL 530 KQ A ++ KKLY +H S+FLE SL+L Sbjct: 165 KQLEAEREQFKKLYEDAHGRSIFLERKFTSLQL 197 >AL117193-10|CAB60304.1| 337|Caenorhabditis elegans Hypothetical protein Y105C5A.17 protein. Length = 337 Score = 27.9 bits (59), Expect = 7.5 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 3/47 (6%) Frame = +3 Query: 495 YSVD*CV*TNMVNSKEKAVNSKNKLWMCE---MLYNFLFNCCRALFC 626 YSV + N VNS V+SK+ MCE ML N FNC ++ C Sbjct: 286 YSVQNMILQNTVNS---TVSSKSNKIMCEKTQMLRNLPFNCKCSVQC 329 >AF026209-13|AAB71271.2| 351|Caenorhabditis elegans Seven tm receptor protein 20 protein. Length = 351 Score = 27.9 bits (59), Expect = 7.5 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = -2 Query: 380 FIVVKAAKYHFLLCLSSVFCTCLLAIFSCYR*KHLG-YFFLFL 255 +IVV H C +S FCT L+ I + K++G Y +L + Sbjct: 13 YIVVSKRISHLGFCSTSFFCTILIIIIVKFSNKNVGSYKYLMI 55 >AF000299-3|AAW88403.1| 342|Caenorhabditis elegans Serpentine receptor, class z protein24, isoform a protein. Length = 342 Score = 27.5 bits (58), Expect = 9.9 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%) Frame = -2 Query: 416 NLINLANKVTMLFI--VVKAAKYHFLLCLSSVFCTCLLAIFSCY 291 N NL +K T+ F+ H + S F CL+ +F CY Sbjct: 10 NETNLLSKSTLSFLDDTFVRVSLHIAMLSSMFFLICLMFLFPCY 53 >AF000299-2|AAC47981.2| 324|Caenorhabditis elegans Serpentine receptor, class z protein24, isoform b protein. Length = 324 Score = 27.5 bits (58), Expect = 9.9 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%) Frame = -2 Query: 416 NLINLANKVTMLFI--VVKAAKYHFLLCLSSVFCTCLLAIFSCY 291 N NL +K T+ F+ H + S F CL+ +F CY Sbjct: 10 NETNLLSKSTLSFLDDTFVRVSLHIAMLSSMFFLICLMFLFPCY 53 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,385,830 Number of Sequences: 27780 Number of extensions: 233527 Number of successful extensions: 547 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 533 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 547 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1645110168 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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