Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40122
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U41528-3|AAK39170.2|  594|Caenorhabditis elegans Kinesin-like pr...    28   7.5  
AL117193-10|CAB60304.1|  337|Caenorhabditis elegans Hypothetical...    28   7.5  
AF026209-13|AAB71271.2|  351|Caenorhabditis elegans Seven tm rec...    28   7.5  
AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine re...    27   9.9  
AF000299-2|AAC47981.2|  324|Caenorhabditis elegans Serpentine re...    27   9.9  

>Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical
           protein Y70C5C.2 protein.
          Length = 414

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +3

Query: 570 WMCEMLYNFLFNCCRAL--FCFSYSI*KSFIDM*MNCVLQC 686
           ++CE+   F  +C      FC+SY+   SF+    NC  QC
Sbjct: 146 FVCELPITFEDDCSNNYNGFCYSYNPPASFVRAQQNCENQC 186


>U41528-3|AAK39170.2|  594|Caenorhabditis elegans Kinesin-like
           protein protein 8 protein.
          Length = 594

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -3

Query: 628 KQNSARQQLNKKLYNISHIHSLFLEFTAFSLEL 530
           KQ  A ++  KKLY  +H  S+FLE    SL+L
Sbjct: 165 KQLEAEREQFKKLYEDAHGRSIFLERKFTSLQL 197


>AL117193-10|CAB60304.1|  337|Caenorhabditis elegans Hypothetical
           protein Y105C5A.17 protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +3

Query: 495 YSVD*CV*TNMVNSKEKAVNSKNKLWMCE---MLYNFLFNCCRALFC 626
           YSV   +  N VNS    V+SK+   MCE   ML N  FNC  ++ C
Sbjct: 286 YSVQNMILQNTVNS---TVSSKSNKIMCEKTQMLRNLPFNCKCSVQC 329


>AF026209-13|AAB71271.2|  351|Caenorhabditis elegans Seven tm
           receptor protein 20 protein.
          Length = 351

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 380 FIVVKAAKYHFLLCLSSVFCTCLLAIFSCYR*KHLG-YFFLFL 255
           +IVV     H   C +S FCT L+ I   +  K++G Y +L +
Sbjct: 13  YIVVSKRISHLGFCSTSFFCTILIIIIVKFSNKNVGSYKYLMI 55


>AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine
           receptor, class z protein24, isoform a protein.
          Length = 342

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = -2

Query: 416 NLINLANKVTMLFI--VVKAAKYHFLLCLSSVFCTCLLAIFSCY 291
           N  NL +K T+ F+         H  +  S  F  CL+ +F CY
Sbjct: 10  NETNLLSKSTLSFLDDTFVRVSLHIAMLSSMFFLICLMFLFPCY 53


>AF000299-2|AAC47981.2|  324|Caenorhabditis elegans Serpentine
           receptor, class z protein24, isoform b protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = -2

Query: 416 NLINLANKVTMLFI--VVKAAKYHFLLCLSSVFCTCLLAIFSCY 291
           N  NL +K T+ F+         H  +  S  F  CL+ +F CY
Sbjct: 10  NETNLLSKSTLSFLDDTFVRVSLHIAMLSSMFFLICLMFLFPCY 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,385,830
Number of Sequences: 27780
Number of extensions: 233527
Number of successful extensions: 547
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)