Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40121
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794...   131   4e-31
07_01_0604 - 4491884-4491993,4493030-4493225,4494269-4494326,449...   101   3e-22
03_02_0849 - 11768191-11771412                                         29   1.7  
05_04_0331 + 20317482-20318174,20318518-20318685,20318773-203188...    27   6.8  
05_01_0213 - 1606383-1606816,1607695-1608355                           27   8.9  

>03_06_0314 -
           33077621-33077869,33078218-33078280,33079392-33079449,
           33079534-33079688,33079797-33080106,33080634-33080890,
           33081280-33081359,33083888-33083948
          Length = 410

 Score =  131 bits (316), Expect = 4e-31
 Identities = 58/66 (87%), Positives = 62/66 (93%)
 Frame = +3

Query: 243 LEKHIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSS 422
           L   IIVPEM+GSIVG+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPGIGATHSS
Sbjct: 345 LRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSS 404

Query: 423 RFIPLK 440
           RFIPLK
Sbjct: 405 RFIPLK 410



 Score = 81.0 bits (191), Expect = 5e-16
 Identities = 48/101 (47%), Positives = 58/101 (57%), Gaps = 21/101 (20%)
 Frame = +1

Query: 28  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRA---- 195
           KKR FRK++YRGVDLD LLDM  + L++L           GLKRKPMAL+KKLR+A    
Sbjct: 252 KKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAGSNF 311

Query: 196 -----------------KKEAPPNEKPEIVKTHLRNISSFP 267
                            KK+AP  EKPE V+THLRN+   P
Sbjct: 312 EGTVFRLGFYEAGSYFVKKDAPAGEKPEPVRTHLRNMIIVP 352


>07_01_0604 -
           4491884-4491993,4493030-4493225,4494269-4494326,
           4494459-4494613,4495092-4495115,4495377-4495489,
           4499943-4500129
          Length = 280

 Score =  101 bits (242), Expect = 3e-22
 Identities = 48/80 (60%), Positives = 58/80 (72%)
 Frame = +1

Query: 28  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 207
           KKR FRK++YRGVDLD LLDM  + L++L           GLKRKPMAL+KKLR+AKK+A
Sbjct: 124 KKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDA 183

Query: 208 PPNEKPEIVKTHLRNISSFP 267
           P  EKPE V+THLRN+   P
Sbjct: 184 PAGEKPEPVRTHLRNMIIVP 203



 Score = 95.1 bits (226), Expect = 3e-20
 Identities = 41/49 (83%), Positives = 45/49 (91%)
 Frame = +3

Query: 243 LEKHIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKH 389
           L   IIVPEM+GSIVG+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKH
Sbjct: 196 LRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKH 244


>03_02_0849 - 11768191-11771412
          Length = 1073

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
 Frame = -1

Query: 294 KCRQLNRPSRER*YVSQVSLHDLWLLIRRSLFLGATQLLDQCHWFT--FKTTSEPPARTG 121
           + R L R + ER Y+   S+  LWLL  +S+   A  LLD+   FT   +  S  P+R  
Sbjct: 48  RIRALLRDAEERRYIDDESVK-LWLLELKSVAYDAETLLDRLTTFTAVARLESAEPSRKR 106

Query: 120 MH*FHELLIGHIKELIEINSPVSELPE 40
              +  L +G  ++   +++ ++E+ E
Sbjct: 107 KRSWLNLQLGP-RQRWGLDAKITEINE 132


>05_04_0331 +
           20317482-20318174,20318518-20318685,20318773-20318895,
           20319094-20319165,20321217-20321431,20321521-20321593,
           20322092-20322568,20322970-20323077,20323184-20323192,
           20323193-20323552
          Length = 765

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 62  ELISISSLICPM-SNSWN*CMPVRAGGSLVVLNVNQWHWS 178
           E+I I  L+C + S  WN  + + A  ++ +  VN+ HWS
Sbjct: 325 EVIEILHLVCHLWSLDWNEKIILSAYATIFIPIVNEGHWS 364


>05_01_0213 - 1606383-1606816,1607695-1608355
          Length = 364

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 397 PVSVLHTAQGSFRSSRASKTTSRLSVT 477
           PVSVLH    S  SS +S TT+  + T
Sbjct: 176 PVSVLHAQHSSSSSSSSSTTTTTTTTT 202


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,966,764
Number of Sequences: 37544
Number of extensions: 247330
Number of successful extensions: 513
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)