Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40121
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29066| Best HMM Match : No HMM Matches (HMM E-Value=.)             132   2e-31
SB_27203| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   5.3  
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_48675| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.3  

>SB_29066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score =  132 bits (319), Expect = 2e-31
 Identities = 58/66 (87%), Positives = 62/66 (93%)
 Frame = +3

Query: 243 LEKHIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSS 422
           L   IIVPEM+GS+VG+YNGKTF QVEIKPEMIGHYLGEFS+TYKPVKHGRPGIGATHSS
Sbjct: 84  LRNMIIVPEMIGSVVGVYNGKTFTQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSS 143

Query: 423 RFIPLK 440
           RFIPLK
Sbjct: 144 RFIPLK 149



 Score =  116 bits (278), Expect = 2e-26
 Identities = 55/85 (64%), Positives = 66/85 (77%)
 Frame = +1

Query: 13  DETLKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRR 192
           D  +K+KR FRKFTYRGVDLDQLLD+ +EQLMEL+          GLKRKP+AL+K+LR+
Sbjct: 7   DAQIKRKRTFRKFTYRGVDLDQLLDLSHEQLMELVCCRQRRRFTRGLKRKPLALMKRLRK 66

Query: 193 AKKEAPPNEKPEIVKTHLRNISSFP 267
           AKKEA P EKPE+VKTHLRN+   P
Sbjct: 67  AKKEAAPMEKPEVVKTHLRNMIIVP 91


>SB_27203| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 527

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = +2

Query: 14  TKPSRKSVFSGSSLTGELISISSLICPMSNSWN*CMPVRAGGSLVVLNV 160
           TKP   S  SGS+  G L   SS  C  S+S +  + V  GG + V  V
Sbjct: 179 TKPDAMSASSGSASAGRLYGNSSW-CSTSSSVSEYLQVDLGGVMTVSGV 226


>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3235

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 321  EIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIP 434
            ++KP++  +  G ++V Y P K GR  I   +  R +P
Sbjct: 1714 DLKPDVKDNGDGTYTVAYVPDKPGRYNIDVKYGDRRVP 1751


>SB_48675| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1329

 Score = 25.0 bits (52), Expect(2) = 7.3
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 225  WLLIRRSLFLGATQLL 178
            WLLIR++L LG+ Q L
Sbjct: 1217 WLLIRQALSLGSVQFL 1232



 Score = 20.6 bits (41), Expect(2) = 7.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 255  YVSQVSLHDLWLLIRRSL 202
            ++    L   WLLIR+SL
Sbjct: 1182 FIGTRQLRQRWLLIRQSL 1199


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,735,604
Number of Sequences: 59808
Number of extensions: 275803
Number of successful extensions: 597
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)