Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40121
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D) ribo... 130 5e-31
At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Stro... 130 5e-31
At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E) 127 4e-30
At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C) ribo... 127 5e-30
At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B) ribo... 125 2e-29
At5g63070.1 68418.m07914 40S ribosomal protein S15, putative 87 5e-18
At1g33850.1 68414.m04194 40S ribosomal protein S15, putative sim... 66 1e-11
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 46 1e-05
At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1 ... 29 2.5
At4g05520.2 68417.m00839 calcium-binding EF hand family protein ... 27 7.5
At4g05520.1 68417.m00838 calcium-binding EF hand family protein ... 27 7.5
At3g13090.1 68416.m01639 ABC transporter, putative similar to MR... 27 7.5
At3g50590.1 68416.m05533 transducin family protein / WD-40 repea... 27 9.9
At2g38400.1 68415.m04717 alanine--glyoxylate aminotransferase, p... 27 9.9
>At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D)
ribosomal protein S15 - Arabidopsis thaliana,
EMBL:Z23161
Length = 152
Score = 130 bits (314), Expect = 5e-31
Identities = 56/66 (84%), Positives = 62/66 (93%)
Frame = +3
Query: 243 LEKHIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSS 422
L IIVPEM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GATHSS
Sbjct: 87 LRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSS 146
Query: 423 RFIPLK 440
RFIPLK
Sbjct: 147 RFIPLK 152
Score = 95.9 bits (228), Expect = 1e-20
Identities = 45/80 (56%), Positives = 56/80 (70%)
Frame = +1
Query: 28 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 207
KKR F+KF ++GVDLD LLDM + L++L GL RKPMAL+KKLR+AK+EA
Sbjct: 15 KKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREA 74
Query: 208 PPNEKPEIVKTHLRNISSFP 267
P EKPE V+THLRN+ P
Sbjct: 75 PAGEKPEPVRTHLRNMIIVP 94
>At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Strong
similarity to Oryza 40S ribosomal protein S15. ESTs
gb|R29788,gb|ATTS0365 come from this gene
Length = 152
Score = 130 bits (314), Expect = 5e-31
Identities = 56/66 (84%), Positives = 62/66 (93%)
Frame = +3
Query: 243 LEKHIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSS 422
L IIVPEM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GATHSS
Sbjct: 87 LRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSS 146
Query: 423 RFIPLK 440
RFIPLK
Sbjct: 147 RFIPLK 152
Score = 95.9 bits (228), Expect = 1e-20
Identities = 45/80 (56%), Positives = 56/80 (70%)
Frame = +1
Query: 28 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 207
KKR F+KF ++GVDLD LLDM + L++L GL RKPMAL+KKLR+AK+EA
Sbjct: 15 KKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREA 74
Query: 208 PPNEKPEIVKTHLRNISSFP 267
P EKPE V+THLRN+ P
Sbjct: 75 PQGEKPEPVRTHLRNMIIVP 94
>At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E)
Length = 149
Score = 127 bits (307), Expect = 4e-30
Identities = 55/66 (83%), Positives = 62/66 (93%)
Frame = +3
Query: 243 LEKHIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSS 422
L IIVPEM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GAT+SS
Sbjct: 84 LRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATNSS 143
Query: 423 RFIPLK 440
RFIPLK
Sbjct: 144 RFIPLK 149
Score = 91.5 bits (217), Expect = 3e-19
Identities = 45/80 (56%), Positives = 54/80 (67%)
Frame = +1
Query: 28 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 207
KKR F+KF++RGVDLD LLDM E L++ GL RKPMAL+KKLR+AK EA
Sbjct: 12 KKRTFKKFSFRGVDLDALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALIKKLRKAKMEA 71
Query: 208 PPNEKPEIVKTHLRNISSFP 267
P EKP V+THLRN+ P
Sbjct: 72 PAGEKPASVRTHLRNMIIVP 91
>At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C)
ribosomal protein S15 - Arabidopsis thaliana,
EMBL:Z23161
Length = 150
Score = 127 bits (306), Expect = 5e-30
Identities = 54/66 (81%), Positives = 62/66 (93%)
Frame = +3
Query: 243 LEKHIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSS 422
L IIVPEM+GS++G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GAT+SS
Sbjct: 85 LRNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATNSS 144
Query: 423 RFIPLK 440
RFIPLK
Sbjct: 145 RFIPLK 150
Score = 93.5 bits (222), Expect = 8e-20
Identities = 45/80 (56%), Positives = 55/80 (68%)
Frame = +1
Query: 28 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 207
KKR F+KF++RGVDLD LLDM + L++L GL RKPMAL+KKLR+AK EA
Sbjct: 13 KKRTFKKFSFRGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRKPMALIKKLRKAKIEA 72
Query: 208 PPNEKPEIVKTHLRNISSFP 267
P EKP V+THLRN+ P
Sbjct: 73 PAGEKPAAVRTHLRNMIIVP 92
>At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B)
ribosomal protein S15 - Arabidopsis thaliana,
EMBL:Z23161
Length = 152
Score = 125 bits (301), Expect = 2e-29
Identities = 52/66 (78%), Positives = 61/66 (92%)
Frame = +3
Query: 243 LEKHIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSS 422
L +I+PEM+GSI+G+YNGKTFNQ+EIKPEMIGHYL EFS+TYKPV+HG+PG GATHSS
Sbjct: 87 LRNMVIMPEMIGSIIGVYNGKTFNQIEIKPEMIGHYLAEFSITYKPVRHGKPGHGATHSS 146
Query: 423 RFIPLK 440
RFIPLK
Sbjct: 147 RFIPLK 152
Score = 101 bits (243), Expect = 2e-22
Identities = 47/82 (57%), Positives = 59/82 (71%)
Frame = +1
Query: 22 LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 201
L KKR F+KF+++GVDLD LLDMP + L+EL GL RKPMAL+KKLR+AK
Sbjct: 13 LAKKRTFKKFSFKGVDLDALLDMPTDDLVELFPSRIRRRMSRGLTRKPMALIKKLRKAKL 72
Query: 202 EAPPNEKPEIVKTHLRNISSFP 267
+AP EKPE+V+THLRN+ P
Sbjct: 73 DAPAGEKPEVVRTHLRNMVIMP 94
>At5g63070.1 68418.m07914 40S ribosomal protein S15, putative
Length = 160
Score = 87.4 bits (207), Expect = 5e-18
Identities = 42/70 (60%), Positives = 51/70 (72%), Gaps = 4/70 (5%)
Frame = +3
Query: 243 LEKHIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGA---- 410
L IIVPEM+GS+VG++NGK FN++ IKPEMIGHYL EFS+T K V H RP I
Sbjct: 91 LRNMIIVPEMIGSVVGVHNGKKFNEIVIKPEMIGHYLAEFSMTCKKVNHHRPRICGCCCF 150
Query: 411 THSSRFIPLK 440
S+RFIPL+
Sbjct: 151 RRSTRFIPLR 160
Score = 82.2 bits (194), Expect = 2e-16
Identities = 41/82 (50%), Positives = 54/82 (65%), Gaps = 2/82 (2%)
Frame = +1
Query: 28 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEA 207
KKR F+KF++RG ++D LL M N L +L + GLK++P+ L+KKLRRAKKEA
Sbjct: 17 KKRTFKKFSFRGFNVDALLKMSNVDLAKLFNARVRRRFYRGLKKQPLILIKKLRRAKKEA 76
Query: 208 PPNE--KPEIVKTHLRNISSFP 267
KPE+VKTHLRN+ P
Sbjct: 77 SDENKMKPEVVKTHLRNMIIVP 98
>At1g33850.1 68414.m04194 40S ribosomal protein S15, putative
similar to SP|Q08112 40S ribosomal protein S15
{Arabidopsis thaliana}
Length = 70
Score = 66.1 bits (154), Expect = 1e-11
Identities = 32/58 (55%), Positives = 39/58 (67%)
Frame = +1
Query: 28 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 201
KKRIF+KF++RGVDLD LLDM E L++ G RKPMAL+KKLR+A K
Sbjct: 12 KKRIFKKFSFRGVDLDALLDMSTEDLVKHFSSRIRRRFSRGFTRKPMALIKKLRKAVK 69
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 46.4 bits (105), Expect = 1e-05
Identities = 24/58 (41%), Positives = 33/58 (56%)
Frame = +3
Query: 222 ARDREDSLEKHIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGR 395
A +R+ + I+PE V S V IYNGKT + +I +GH GEF+ T K KH +
Sbjct: 153 ALNRKIWSRRSTILPEYVDSAVRIYNGKTHVRCKITEGKVGHKFGEFAFTRKVKKHAK 210
>At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1
significant, 2 weak WD-40 repeats (PF00400); similar to
transducin beta-like 1 protein.(SP:O60907) [Homo
sapiens]
Length = 467
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 324 IKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSR 425
+KPE+ G Y E Y P+K PG ++ SSR
Sbjct: 20 MKPELPGFYYDEEKNRYFPIKGPIPGAKSSSSSR 53
>At4g05520.2 68417.m00839 calcium-binding EF hand family protein
similar to EH-domain containing protein 1 from {Mus
musculus} SP|Q9WVK4, {Homo sapiens} SP|Q9H4M9,
receptor-mediated endocytosis 1 from [Caenorhabditis
elegans] GI:13487775, GI:13487777, GI:13487779; contains
INTERPRO:IPR002048 calcium-binding EF-hand domain
Length = 545
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 240 SLEKHIIVPEMVGSIVGIYNGKTFNQVEIKP 332
SL K + PE+V +G +N K N+V + P
Sbjct: 377 SLGKVLNTPEVVRVYIGSFNDKPINEVAVGP 407
>At4g05520.1 68417.m00838 calcium-binding EF hand family protein
similar to EH-domain containing protein 1 from {Mus
musculus} SP|Q9WVK4, {Homo sapiens} SP|Q9H4M9,
receptor-mediated endocytosis 1 from [Caenorhabditis
elegans] GI:13487775, GI:13487777, GI:13487779; contains
INTERPRO:IPR002048 calcium-binding EF-hand domain
Length = 546
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 240 SLEKHIIVPEMVGSIVGIYNGKTFNQVEIKP 332
SL K + PE+V +G +N K N+V + P
Sbjct: 378 SLGKVLNTPEVVRVYIGSFNDKPINEVAVGP 408
>At3g13090.1 68416.m01639 ABC transporter, putative similar to
MRP-like ABC transporter [Arabidopsis thaliana]
GI:2316016; contains Pfam profile: PF00005 ABC
transporter
Length = 1466
Score = 27.1 bits (57), Expect = 7.5
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -1
Query: 132 ARTGMH*FHELLIGHI--KELIEINSPVSELPENTLFL 25
A TG H F E+L+G + K +I + V LPE L L
Sbjct: 758 AHTGSHLFKEVLLGLLRHKTVIYVTHQVEFLPEADLIL 795
>At3g50590.1 68416.m05533 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400); some
similarity to s-tomosyn isoform (GI:4689231)[Rattus
norvegicus]; contains non-consensus AT-AC splice sites at
intron 18
Length = 1606
Score = 26.6 bits (56), Expect = 9.9
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +3
Query: 261 VPEMVGSIVGIYNGKT---FNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFI 431
+P +V +G+Y G N VEIK + + G S+ KPV + A SS +
Sbjct: 1040 IPSIVADHIGVYLGCVKGRVNVVEIKEDSLVSKPGGLSLLGKPVSDKPLALPAGESSSMM 1099
Query: 432 PLK 440
L+
Sbjct: 1100 GLE 1102
>At2g38400.1 68415.m04717 alanine--glyoxylate aminotransferase,
putative / beta-alanine-pyruvate aminotransferase,
putative / AGT, putative similar to SP|Q64565
Alanine--glyoxylate aminotransferase 2, mitochondrial
precursor (EC 2.6.1.44) (AGT 2) (Beta-alanine-pyruvate
aminotransferase) {Rattus norvegicus}; contains Pfam
profile PF00202: aminotransferase, class III
Length = 477
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 246 EKHIIVPEMVGSIVGIYNGKTFNQVEIKPEMIG 344
E H +VP++V GI NG V PE+ G
Sbjct: 308 EAHNVVPDIVTMAKGIGNGFPLGAVVTTPEIAG 340
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,298,123
Number of Sequences: 28952
Number of extensions: 193710
Number of successful extensions: 494
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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