Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40120
         (674 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             156   2e-38
SB_11242| Best HMM Match : MAM (HMM E-Value=0)                         29   4.5  
SB_39106| Best HMM Match : Prion (HMM E-Value=1.2)                     28   6.0  
SB_13670| Best HMM Match : Dynamin_M (HMM E-Value=1.1)                 28   6.0  
SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_56270| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  156 bits (378), Expect = 2e-38
 Identities = 71/86 (82%), Positives = 78/86 (90%)
 Frame = +1

Query: 1   LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 180
           +KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G EV KIVKQR
Sbjct: 433 MKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEEVKKIVKQR 492

Query: 181 LIKVDGKDWTDPTYPAGFMDVVSIER 258
           LIK+DGK  TD TYPAGFMDVV+I++
Sbjct: 493 LIKIDGKVRTDTTYPAGFMDVVTIDK 518



 Score =  122 bits (295), Expect = 2e-28
 Identities = 55/85 (64%), Positives = 68/85 (80%)
 Frame = +3

Query: 255 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHXGCTIRYXDPL 434
           KT E FRL+YDVKGRF +HRIT EEAKYKL +V+RV  G K VPY+VTH   TIRY DP 
Sbjct: 518 KTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVDVGAKGVPYIVTHDARTIRYPDPN 577

Query: 435 IKVNDSIQLDIATTKIMDFIKFESG 509
           IKVND++ +DI T K++D+IKF++G
Sbjct: 578 IKVNDTVVIDIKTGKVIDYIKFDTG 602



 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 16/29 (55%), Positives = 22/29 (75%)
 Frame = +2

Query: 509 NLCMITGCRNLXRVGTIVFRERHSGSFDI 595
           N+ M+ G RN+ RVG +  RE+H+GSFDI
Sbjct: 603 NMAMVVGGRNMGRVGMVTHREKHAGSFDI 631


>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
          Length = 348

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = +3

Query: 120 EES--SEVCFDRKRSPENCE 173
           EES  +E+C DRKR P++CE
Sbjct: 76  EESRYNELCHDRKRGPDDCE 95


>SB_39106| Best HMM Match : Prion (HMM E-Value=1.2)
          Length = 523

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 318 TPEEAKYKLCKVKRVATGPKNVPYLVTHXGCT 413
           TP++ K+ + +V     G +N P  +TH  CT
Sbjct: 348 TPDDIKFLMSRVVGPKPGEQNYPAFLTHLFCT 379


>SB_13670| Best HMM Match : Dynamin_M (HMM E-Value=1.1)
          Length = 324

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 318 TPEEAKYKLCKVKRVATGPKNVPYLVTHXGCT 413
           TP++ K+ + +V     G +N P  +TH  CT
Sbjct: 22  TPDDIKFLMSRVVGPKPGEQNYPAFLTHLFCT 53


>SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = -1

Query: 197 PSTFMRRCFTIFRTSFPVKAYFRRFLRK------ITRGKHSRNLW 81
           PS++    F +FRT FP   +  RF R+      IT     ++LW
Sbjct: 84  PSSYNGHQFLVFRTDFPFSKHKNRFKRRTKYLYVITTSTKHQHLW 128


>SB_56270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1207

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 550 HTXQVTASSDHTQVPDSNLMKSIIFVVAMSNWMESL 443
           H    +A   HT VP+SN   S  FV+ ++ ++ SL
Sbjct: 877 HAEDPSARLRHTPVPESNSAWSTSFVIGVAGFLVSL 912


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,723,260
Number of Sequences: 59808
Number of extensions: 444425
Number of successful extensions: 1099
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)