Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40120
         (674 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   122   3e-28
Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   7.0  
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AC006795-7|AAF59497.2|  199|Caenorhabditis elegans Hypothetical ...    27   9.2  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  122 bits (293), Expect = 3e-28
 Identities = 59/91 (64%), Positives = 68/91 (74%)
 Frame = +1

Query: 1   LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 180
           LKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  KI+ QR
Sbjct: 8   LKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQR 67

Query: 181 LIKVDGKDWTDPTYPAGFMDVVSIERLMNCF 273
           +++VDGK  T   +P GFMDVV+IER    F
Sbjct: 68  VVRVDGKVRTCHKFPTGFMDVVAIERTNEYF 98



 Score =  105 bits (253), Expect = 2e-23
 Identities = 49/85 (57%), Positives = 60/85 (70%)
 Frame = +3

Query: 255 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHXGCTIRYXDPL 434
           +TNE FR++YD KGR+ +HRI   EA +KLCKVK V T  K VP L T  G TIRY DP 
Sbjct: 93  RTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPH 152

Query: 435 IKVNDSIQLDIATTKIMDFIKFESG 509
           +KVND+I  +I+T KI D +KFE G
Sbjct: 153 VKVNDTIVFNISTQKITDSVKFEPG 177



 Score = 33.1 bits (72), Expect = 0.19
 Identities = 21/55 (38%), Positives = 27/55 (49%)
 Frame = +2

Query: 509 NLCMITGCRNLXRVGTIVFRERHSGSFDICGTFKGLQRGPHLSATKVEXTCVINR 673
           NL  +TG RN+ RVG I  RER  G+ DI           H  AT++    VI +
Sbjct: 178 NLAYVTGGRNVGRVGIIGHRERLPGASDIIHI---KDSAGHSFATRISNVFVIGK 229


>Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical
           protein T04C10.4 protein.
          Length = 208

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 410 HHPLXRPTYQSQRFHPVRHRNYEDYGLH 493
           HH    PTY    F+P  H++Y+ + L+
Sbjct: 32  HHHHQSPTYPQSYFNPYSHQSYQQHHLN 59


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -2

Query: 412  VQPXCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 287
            V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 880  VNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 294 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP 386
           G+  + R+T  E  Y+ CK+++ A   K VP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVP 332


>AC006795-7|AAF59497.2|  199|Caenorhabditis elegans Hypothetical
           protein Y50D4B.1 protein.
          Length = 199

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 215 GSVQSFPSTFMRRCFTIFRTSFPVKAYFRRFLRKITRGKH 96
           G+ +   + FMRRC T F   +PV A  +R   +I R K+
Sbjct: 146 GATKIARNRFMRRCLTRFPVHYPVPA--KRIPMEINRQKN 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,731,383
Number of Sequences: 27780
Number of extensions: 320261
Number of successful extensions: 856
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)