Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40120
         (674 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   2.7  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.7  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   3.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.7  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   4.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   4.7  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   6.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   8.1  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 374 RSGRXTLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 255
           R G+  +  T L+ ++L    + CE  +NI    K ++SL
Sbjct: 75  RYGQSAVGLTFLLGAILVQVAIICEGVMNIQKDNKSYLSL 114


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 600 PQMSKXPECLSRNTMVPTRXKLRH 529
           P  +   +CL  N  VP + +LRH
Sbjct: 118 PNTNISEDCLYLNIWVPQKYRLRH 141


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 600 PQMSKXPECLSRNTMVPTRXKLRH 529
           P  +   +CL  N  VP + +LRH
Sbjct: 118 PNTNISEDCLYLNIWVPQKYRLRH 141


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 169 VKQRLIKVDGKDWTDPTY 222
           VKQ ++ V+  D TDP Y
Sbjct: 145 VKQLIVGVNKMDMTDPPY 162


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 127 RLKYALTGNEVLKIVKQRLIKVDGKDWTDPTYPA 228
           R K+ LTG   L   K RL+  +      P +P+
Sbjct: 182 RTKHRLTGETRLSATKGRLVITEPVGSVRPKFPS 215


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 137 YFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLS 36
           Y R  +R  T  +H ++    +DG+G Y   S S
Sbjct: 83  YNRMDMRNATYYQHQQDHGSGMDGMGGYRSASPS 116


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = -1

Query: 332 SLLRGDTVDCESALNII-D*TKQFISLSIETTSINPAG*VGSVQSFPSTFMRRCFTIFRT 156
           SLL+ +TV C+ A++++ +   Q + +S +   I     +  + S+  + + +C T F  
Sbjct: 381 SLLKENTVTCQEAMHMLKNADSQLLVISDDNIHIKGVISLNKLTSYVISGIVKC-TDFVD 439

Query: 155 SFPVKAYFR 129
              VK Y +
Sbjct: 440 KAMVKQYVK 448


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 667 YDTRXFNLRXRKVWSPLESFECA 599
           YD    N+    V  P+ESFE A
Sbjct: 179 YDNIQVNVSGDNVPQPIESFEAA 201


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +3

Query: 15  RSQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPE 122
           +S++ DV ++WR +  E  NR+    R++    + E
Sbjct: 261 QSETYDVLRSWRNLMDEHSNRTNSDPRMILTEAYTE 296


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,048
Number of Sequences: 438
Number of extensions: 3680
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)