Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40120
(674 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso... 139 2e-33
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B) 139 2e-33
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai... 139 2e-33
At4g10710.1 68417.m01751 transcriptional regulator-related simil... 31 0.70
At3g18730.1 68416.m02378 tetratricopeptide repeat (TPR)-containi... 30 1.6
At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase, ... 29 2.8
At1g66660.1 68414.m07574 seven in absentia (SINA) protein, putat... 29 2.8
At2g42160.1 68415.m05218 zinc finger (ubiquitin-hydrolase) domai... 28 6.6
>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
protein S4, Arabidopsis thaliana, PIR:T48480
Length = 262
Score = 139 bits (336), Expect = 2e-33
Identities = 64/86 (74%), Positives = 73/86 (84%)
Frame = +1
Query: 1 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 180
LKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+ QR
Sbjct: 9 LKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQR 68
Query: 181 LIKVDGKDWTDPTYPAGFMDVVSIER 258
I+VDGK TD TYPAGFMDVVSI +
Sbjct: 69 HIQVDGKVRTDKTYPAGFMDVVSIPK 94
Score = 117 bits (282), Expect = 6e-27
Identities = 53/88 (60%), Positives = 66/88 (75%)
Frame = +3
Query: 255 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHXGCTIRYXDPL 434
KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+ G TIRY DPL
Sbjct: 94 KTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPL 153
Query: 435 IKVNDSIQLDIATTKIMDFIKFESGTCV 518
IK ND+I+LD+ KI++FIKF+ G V
Sbjct: 154 IKPNDTIKLDLEANKIVEFIKFDVGNVV 181
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +2
Query: 503 VWNLCMITGCRNLXRVGTIVFRERHSGSFD 592
V N+ M+TG RN RVG I RE+H GSF+
Sbjct: 177 VGNVVMVTGGRNRGRVGVIKNREKHKGSFE 206
>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
Length = 262
Score = 139 bits (336), Expect = 2e-33
Identities = 64/86 (74%), Positives = 73/86 (84%)
Frame = +1
Query: 1 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 180
LKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+ QR
Sbjct: 9 LKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQR 68
Query: 181 LIKVDGKDWTDPTYPAGFMDVVSIER 258
I+VDGK TD TYPAGFMDVVSI +
Sbjct: 69 HIQVDGKVRTDKTYPAGFMDVVSIPK 94
Score = 117 bits (281), Expect = 8e-27
Identities = 53/88 (60%), Positives = 66/88 (75%)
Frame = +3
Query: 255 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHXGCTIRYXDPL 434
KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+ G TIRY DPL
Sbjct: 94 KTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPL 153
Query: 435 IKVNDSIQLDIATTKIMDFIKFESGTCV 518
IK ND+I+LD+ KI++FIKF+ G V
Sbjct: 154 IKPNDTIKLDLEENKIVEFIKFDVGNVV 181
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +2
Query: 503 VWNLCMITGCRNLXRVGTIVFRERHSGSFD 592
V N+ M+TG RN RVG I RE+H GSF+
Sbjct: 177 VGNVVMVTGGRNRGRVGVIKNREKHKGSFE 206
>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
ribosomal protein S4 signature from residues 8 to 22
Length = 261
Score = 139 bits (336), Expect = 2e-33
Identities = 64/86 (74%), Positives = 73/86 (84%)
Frame = +1
Query: 1 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 180
LKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+ QR
Sbjct: 9 LKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQR 68
Query: 181 LIKVDGKDWTDPTYPAGFMDVVSIER 258
I+VDGK TD TYPAGFMDVVSI +
Sbjct: 69 HIQVDGKVRTDKTYPAGFMDVVSIPK 94
Score = 117 bits (281), Expect = 8e-27
Identities = 53/88 (60%), Positives = 66/88 (75%)
Frame = +3
Query: 255 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHXGCTIRYXDPL 434
KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+ G TIRY DPL
Sbjct: 94 KTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPL 153
Query: 435 IKVNDSIQLDIATTKIMDFIKFESGTCV 518
IK ND+I+LD+ KI++FIKF+ G V
Sbjct: 154 IKPNDTIKLDLEENKIVEFIKFDVGNVV 181
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +2
Query: 503 VWNLCMITGCRNLXRVGTIVFRERHSGSFD 592
V N+ M+TG RN RVG I RE+H GSF+
Sbjct: 177 VGNVVMVTGGRNRGRVGVIKNREKHKGSFE 206
>At4g10710.1 68417.m01751 transcriptional regulator-related similar
to chromatin-specific transcription elongation factor
FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
Length = 1074
Score = 31.1 bits (67), Expect = 0.70
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 101 KHSRNLWGPVDGLGAYTPPSLSNIHAL 21
KHS +LWG D L TPP+ ++ L
Sbjct: 44 KHSADLWGSADALAIATPPASDDLRYL 70
>At3g18730.1 68416.m02378 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 1311
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = -2
Query: 604 CATNVEGXGMSLAEHDGAHTXQVTASSDHTQVPDSN-LMKSIIFVVAMSNWMESLTL 437
C TN+E + +A+ + + TA+S +P N ++K + ++M+N ++ L L
Sbjct: 1200 CETNMECDDLEVADSEDEQIEEGTATSSSLSLPRKNHIVKELSTALSMANQLKILDL 1256
>At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase,
putative / steroid 5-alpha-reductase, putative identical
to gi:1280611; contains a steroid 5-alpha reductase,
C-terminal domain
Length = 262
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -1
Query: 191 TFMRRCFTIFRTSFPVKAYFRRFLRKITRGKHSRNLWGP 75
TF R C + P A +FL+ GKH+R WGP
Sbjct: 8 TFFRYCLLTLIFAGPPTAVLLKFLQA-PYGKHNRTGWGP 45
>At1g66660.1 68414.m07574 seven in absentia (SINA) protein, putative
similar to SIAH2 protein [Brassica napus var. napus]
GI:7657878; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 224
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 536 NLXRVGTIVFRERHSGSFDICGTFKGLQRGPHLSATKV 649
NL R T+VF+E G + FKGL+ G +++ ++
Sbjct: 115 NLGRKKTVVFKEEKEGDLIVVQAFKGLE-GVYVTVNRI 151
>At2g42160.1 68415.m05218 zinc finger (ubiquitin-hydrolase)
domain-containing protein similar to BRCA1-associated
protein 2 [Homo sapiens] GI:3252872; contains Pfam
profile PF02148: Zn-finger in ubiquitin-hydrolases and
other protein
Length = 488
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = -2
Query: 526 SDHTQVPDSNLMKSIIFVVAMSNWMESLTLI 434
S H+ +P+ + + +F+VA+ N++ SL I
Sbjct: 57 SSHSSLPNPSSRSTTLFIVAVPNYLSSLDFI 87
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,878,925
Number of Sequences: 28952
Number of extensions: 300755
Number of successful extensions: 778
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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