Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40117
         (819 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0821 - 11519840-11519989,11520333-11520476,11520556-115207...    29   5.9  

>03_02_0821 -
           11519840-11519989,11520333-11520476,11520556-11520754,
           11521309-11521412,11521488-11521598,11521653-11521771,
           11521858-11522002,11522516-11522568,11522676-11522721,
           11522818-11522963,11523691-11523760,11524930-11525083,
           11525186-11525307,11525612-11525835,11526317-11526371,
           11526793-11526972
          Length = 673

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = -3

Query: 811 WNLRPILDPAGPSIHKT---LSNWSTLCFSL*KW*NSRSGVEVLK-KIINLFKNK 659
           W L    D +G ++H     +SN+  L  S   W NS  G   LK K++N F NK
Sbjct: 530 WMLHFFKDSSGATLHPLTIQVSNYDQLAASALTWQNSNDGNTYLKIKVVN-FGNK 583


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,634,027
Number of Sequences: 37544
Number of extensions: 368493
Number of successful extensions: 638
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)