Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40117
         (819 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74474-2|CAA98955.1|  425|Caenorhabditis elegans Hypothetical pr...    31   0.75 
AL021447-3|CAA16274.1|  459|Caenorhabditis elegans Hypothetical ...    29   3.0  
AF067211-6|AAC16989.1|  308|Caenorhabditis elegans Serpentine re...    28   7.0  
AF067211-5|AAW88420.1|  329|Caenorhabditis elegans Serpentine re...    28   7.0  

>Z74474-2|CAA98955.1|  425|Caenorhabditis elegans Hypothetical
           protein K10C8.2 protein.
          Length = 425

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 351 FRYLFQIIRHNIHTCMFAIVPILIHFPSWI*IPLQYSD 238
           F YLF II ++I+ C+F+   +  H  +W  + L +SD
Sbjct: 29  FVYLFGIISNSINICVFSQKSMRNHTVNWFFLALSFSD 66


>AL021447-3|CAA16274.1|  459|Caenorhabditis elegans Hypothetical
           protein F19B2.7 protein.
          Length = 459

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = +3

Query: 120 ESQHVQ*E-NKDIKKI*ELN-SLVS*DPFPELQQIENTNPHHQNIVREFISNSENVSVLE 293
           +SQ +Q + N++ +KI   N ++V+     E QQI    P     + + I N++N ++ E
Sbjct: 130 DSQDIQEDINEEQRKINNTNPTIVNNQEVYECQQIVPEIPAEYPAINQHIDNNQNENIFE 189

Query: 294 QSQTYRYVC 320
            S    ++C
Sbjct: 190 YSIGEHFIC 198


>AF067211-6|AAC16989.1|  308|Caenorhabditis elegans Serpentine
           receptor, class z protein85, isoform a protein.
          Length = 308

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 621 FVACIVNIVFYLTLFLNKFIIFFSTSTP 704
           FV  I++ V  LT+F++  + F +TSTP
Sbjct: 38  FVMVIMSYVLLLTIFMSCLLTFSTTSTP 65


>AF067211-5|AAW88420.1|  329|Caenorhabditis elegans Serpentine
           receptor, class z protein85, isoform b protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 621 FVACIVNIVFYLTLFLNKFIIFFSTSTP 704
           FV  I++ V  LT+F++  + F +TSTP
Sbjct: 59  FVMVIMSYVLLLTIFMSCLLTFSTTSTP 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,372,473
Number of Sequences: 27780
Number of extensions: 380388
Number of successful extensions: 776
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)