Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40116
         (845 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0115 - 11248021-11248101,11249017-11249118                       56   3e-08
05_03_0661 - 16726958-16726966,16727133-16727234                       56   4e-08

>01_02_0115 - 11248021-11248101,11249017-11249118
          Length = 60

 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 24/35 (68%), Positives = 29/35 (82%)
 Frame = +2

Query: 32  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGV 136
           MAKSKNHT HNQ+ KAH+NGIKKP++ R  ST G+
Sbjct: 1   MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGM 35


>05_03_0661 - 16726958-16726966,16727133-16727234
          Length = 36

 Score = 56.0 bits (129), Expect = 4e-08
 Identities = 24/34 (70%), Positives = 28/34 (82%)
 Frame = +2

Query: 32  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLG 133
           MAKSKNHT HNQ+ KAH+NGIKKP++ R  ST G
Sbjct: 1   MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKG 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,937,257
Number of Sequences: 37544
Number of extensions: 296986
Number of successful extensions: 521
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)