Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40116
         (845 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.67 
SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)               29   4.7  
SB_56928| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1383

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 14/21 (66%), Positives = 15/21 (71%)
 Frame = +2

Query: 74  KAHRNGIKKPRKTRHESTLGV 136
           K HRNGIKKPR  R+ S  GV
Sbjct: 175 KWHRNGIKKPRTNRYPSLKGV 195


>SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)
          Length = 413

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 29  KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHEST 127
           K AKSK   NH ++ K  R   KK ++T  +ST
Sbjct: 145 KNAKSKIKRNHGEDNKPKRISTKKRKRTDKDST 177


>SB_56928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -3

Query: 273 YEAFKLFISAYKITKVRRLFIKIKFLS*FLSELNYLKY*VLFIIALTPRV 124
           Y+  ++ ISAY   KVR +F+  + L   +S   Y K  V+ ++    RV
Sbjct: 62  YQVLRVVISAYLYPKVRGVFVLYQVLRVVISAFLYPKVHVVVVLYQVLRV 111


>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4700

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -2

Query: 661 RSTQNQVGYELTNQNYKYWSLTIRAYVIINL*VCSSSFLLHAN 533
           R   + VGY++  +N + + L+ R    +N   CSSS +++A+
Sbjct: 466 RKAFDLVGYDILLRNLRMYGLSARRVAGLNHIYCSSSAMMYAD 508


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,995,798
Number of Sequences: 59808
Number of extensions: 398308
Number of successful extensions: 730
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)