Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40116
         (845 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   2.0  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.7  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   8.2  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +2

Query: 38  KSKNHTNHNQNRKAHRNGIKKPRKTRH 118
           +  NH NHN N+  H +        +H
Sbjct: 420 QDNNHYNHNHNQARHSSKSDNQNNNQH 446


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 664 LRSTQNQVGYELTNQNYKYWSLT 596
           ++ T N + Y L   NY  W LT
Sbjct: 188 MKKTYNNIDYYLLAANYTGWYLT 210


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 664 LRSTQNQVGYELTNQNYKYWSLT 596
           ++ T N + Y L   NY  W LT
Sbjct: 188 MKKTYNNIDYYLLAANYTGWYLT 210


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 756 KHRPLRVLTGNFS 794
           K+R LR+ TGNFS
Sbjct: 54  KYRALRLDTGNFS 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,125
Number of Sequences: 438
Number of extensions: 3828
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)