Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40115
(832 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 121 6e-28
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 121 6e-28
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 120 1e-27
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 36 0.052
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 31 0.85
11_01_0355 + 2679561-2680985,2681183-2682295 31 1.1
02_05_0958 + 33073302-33073442,33073839-33073913,33074382-330744... 30 2.6
06_01_0080 + 644021-645463 29 3.4
03_03_0258 - 15905847-15905990,15906088-15906244,15906374-159065... 29 3.4
05_06_0010 - 24835896-24836131,24836838-24837111,24837314-248374... 29 6.0
01_01_0703 - 5425713-5425862,5426302-5426451,5426853-5426964,542... 29 6.0
03_04_0243 + 19298293-19299117 28 7.9
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 121 bits (292), Expect = 6e-28
Identities = 56/100 (56%), Positives = 73/100 (73%)
Frame = +2
Query: 494 KGYY*IINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKP 673
KG II V ++K GDKVG+SE+ LL L I PFSYGLV+ VYDSG++F+PE+LD+
Sbjct: 152 KGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTE 211
Query: 674 EDLRAKFQAGVANVAALSLAIGYPTYCFSPHSIANGFKNL 793
EDL KF +GV+ VA++SLAI YPT +PH NG+KN+
Sbjct: 212 EDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNV 251
Score = 104 bits (250), Expect = 8e-23
Identities = 51/92 (55%), Positives = 66/92 (71%)
Frame = +3
Query: 243 HQRPLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIP 422
H N LE L+P + GNVG +FT+GDL EVR+++ + KV APAR G +AP+ VV+P
Sbjct: 69 HADNTGNKDFLE-LMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVP 127
Query: 423 AHNTGLGPEKTSFFQALSIPTKISKGTIESST 518
NTGL P +TSFFQ L+IPTKI+KGT+E T
Sbjct: 128 PGNTGLDPSQTSFFQVLNIPTKINKGTVEIIT 159
Score = 38.7 bits (86), Expect = 0.006
Identities = 21/41 (51%), Positives = 24/41 (58%)
Frame = +2
Query: 59 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQX*QI 181
+ KA K Y K+ QLLDEY K I ADNVGS Q +I
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEI 44
Score = 37.1 bits (82), Expect = 0.017
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = +1
Query: 190 LRGSSIVLMGKNTMMRKAIKDH 255
LRG SIVLMGKNT++R+ IK H
Sbjct: 48 LRGDSIVLMGKNTLIRRCIKVH 69
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 121 bits (292), Expect = 6e-28
Identities = 56/100 (56%), Positives = 73/100 (73%)
Frame = +2
Query: 494 KGYY*IINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKP 673
KG II V ++K GDKVG+SE+ LL L I PFSYGLV+ VYDSG++F+PE+LD+
Sbjct: 152 KGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTE 211
Query: 674 EDLRAKFQAGVANVAALSLAIGYPTYCFSPHSIANGFKNL 793
EDL KF +GV+ VA++SLAI YPT +PH NG+KN+
Sbjct: 212 EDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNV 251
Score = 104 bits (250), Expect = 8e-23
Identities = 51/92 (55%), Positives = 66/92 (71%)
Frame = +3
Query: 243 HQRPLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIP 422
H N LE L+P + GNVG +FT+GDL EVR+++ + KV APAR G +AP+ VV+P
Sbjct: 69 HADNTGNKDFLE-LMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVP 127
Query: 423 AHNTGLGPEKTSFFQALSIPTKISKGTIESST 518
NTGL P +TSFFQ L+IPTKI+KGT+E T
Sbjct: 128 PGNTGLDPSQTSFFQVLNIPTKINKGTVEIIT 159
Score = 38.7 bits (86), Expect = 0.006
Identities = 21/41 (51%), Positives = 24/41 (58%)
Frame = +2
Query: 59 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQX*QI 181
+ KA K Y K+ QLLDEY K I ADNVGS Q +I
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEI 44
Score = 37.1 bits (82), Expect = 0.017
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = +1
Query: 190 LRGSSIVLMGKNTMMRKAIKDH 255
LRG SIVLMGKNT++R+ IK H
Sbjct: 48 LRGDSIVLMGKNTLIRRCIKVH 69
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 120 bits (289), Expect = 1e-27
Identities = 55/100 (55%), Positives = 73/100 (73%)
Frame = +2
Query: 494 KGYY*IINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKP 673
KG II V ++K GDKVG+SE+ LL L I PFSYGLV+ VYDSG++F+PE+LD+
Sbjct: 152 KGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTE 211
Query: 674 EDLRAKFQAGVANVAALSLAIGYPTYCFSPHSIANGFKNL 793
+DL KF +GV+ VA++SLAI YPT +PH NG+KN+
Sbjct: 212 DDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNV 251
Score = 104 bits (250), Expect = 8e-23
Identities = 48/85 (56%), Positives = 64/85 (75%)
Frame = +3
Query: 264 NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLG 443
N +L+P + GNVG +FT+GDL EVR+++ + KV APAR G +AP+ VV+P NTGL
Sbjct: 75 NKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLD 134
Query: 444 PEKTSFFQALSIPTKISKGTIESST 518
P +TSFFQ L+IPTKI+KGT+E T
Sbjct: 135 PSQTSFFQVLNIPTKINKGTVEIIT 159
Score = 38.7 bits (86), Expect = 0.006
Identities = 21/41 (51%), Positives = 24/41 (58%)
Frame = +2
Query: 59 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQX*QI 181
+ KA K Y K+ QLLDEY K I ADNVGS Q +I
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEI 44
Score = 37.1 bits (82), Expect = 0.017
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = +1
Query: 190 LRGSSIVLMGKNTMMRKAIKDH 255
LRG SIVLMGKNT++R+ IK H
Sbjct: 48 LRGDSIVLMGKNTLIRRCIKVH 69
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 35.5 bits (78), Expect = 0.052
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Frame = +3
Query: 249 RPLDNNPALEKL-LPH--IKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSV-- 413
R L N AL+KL LPH ++GN+GF+ + + ++ D +L++ A P + LS
Sbjct: 394 RTLGNIAALQKLVLPHNNLEGNMGFLSSLSECRQLEDLILDHNSFVGALPDHLGNLSARL 453
Query: 414 --VIPAHN--TGLGPEKTSFFQALSI 479
I HN G PEK S +L +
Sbjct: 454 ISFIADHNKLAGSLPEKMSNLSSLEL 479
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 31.5 bits (68), Expect = 0.85
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Frame = +3
Query: 267 PALEK-LLPHIKGN---VGFVFTRGDLVEV--RDKLLENKVQAPARPGAIAPLSVVIPA 425
PAL+K L H K VG + T GDL + + L+++KV P PGA+ +S + PA
Sbjct: 131 PALDKDALWHFKPEKLGVGDIITGGDLYAIVNENTLMQHKVALP--PGAMGKISYIAPA 187
>11_01_0355 + 2679561-2680985,2681183-2682295
Length = 845
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 244 IKDHWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKL 378
I+D W ++ HTS TL+ SP+ +S+ T+C+ + +
Sbjct: 476 IQDLWNPMRNGSAPHHTSELTLSFSSPSPSSISGYTSCYNNNNMM 520
>02_05_0958 +
33073302-33073442,33073839-33073913,33074382-33074497,
33076863-33076977,33077100-33077228,33078907-33078954,
33079343-33079469,33079634-33079789,33080031-33080287,
33080431-33080580,33080660-33080714,33080793-33081088,
33081252-33081335,33081869-33081941,33082164-33082291,
33082905-33083090,33083179-33083316,33083394-33083519,
33083705-33083965
Length = 886
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +3
Query: 225 HNDAQSHQRPLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAI 398
H++ + Q P N +K L I VGF+F LVE + L E ++Q P G I
Sbjct: 737 HSNESTSQSPAYNAKLHQKSLEVIP--VGFIFEDDTLVEPANSLAEPQLQQPLDNGLI 792
>06_01_0080 + 644021-645463
Length = 480
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -3
Query: 491 NLGRDRKSLEERGLLWTEAGVVGGND 414
N R K++EERGLL+ GV GG +
Sbjct: 110 NTERREKAMEERGLLYLGMGVSGGEE 135
>03_03_0258 -
15905847-15905990,15906088-15906244,15906374-15906504,
15906991-15907126,15907193-15907464,15907874-15908169,
15908279-15908646,15908922-15908987,15909064-15909129,
15909226-15909297,15909391-15909459,15909549-15909620,
15909708-15909776,15909874-15909945,15910046-15910178,
15911223-15911361
Length = 753
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -2
Query: 636 PESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSLMIQ 505
PE LT RP +G+ FN LR ++ +PT G + S+ ++
Sbjct: 358 PEKNEPLTLRPIASGK-FNQLRTISIISPTAKEGLQKTVSMNLK 400
>05_06_0010 -
24835896-24836131,24836838-24837111,24837314-24837462,
24837813-24838040,24838347-24838587
Length = 375
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 743 PTYCFSPHSIANGFKNLFGQSL 808
P+ C + ANGFKN FG+SL
Sbjct: 145 PSICNTTTEQANGFKNCFGKSL 166
>01_01_0703 -
5425713-5425862,5426302-5426451,5426853-5426964,
5427120-5427481,5427578-5427712,5427812-5427889,
5427989-5428174,5428266-5428452,5428552-5428658,
5428732-5428806,5428885-5429040,5429165-5429437,
5429548-5429643,5429724-5429814,5429883-5430385
Length = 886
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/44 (29%), Positives = 28/44 (63%)
Frame = +2
Query: 527 ILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEI 658
+++P D VG S +++ +++ P+S VV+ +Y+S + A +I
Sbjct: 353 LIRPSD-VGGSVIHIVDHMDLEPWSVPEVVRPLYESSAMVAQKI 395
>03_04_0243 + 19298293-19299117
Length = 274
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -1
Query: 418 MTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLPLMCGNSFS 275
+ TD+ + APG A A + S SRTS +P ++ PT P +S +
Sbjct: 172 VVTDSLSRAPGAAWAAAMAPTSWSRTS--APPASSSPTSPRRARSSLT 217
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,051,093
Number of Sequences: 37544
Number of extensions: 557430
Number of successful extensions: 1536
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1536
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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