Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40115
(832 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 119 2e-27
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 113 1e-25
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 113 1e-25
At3g09330.1 68416.m01107 amino acid transporter family protein b... 30 1.6
At1g60250.1 68414.m06785 zinc finger (B-box type) family protein... 29 2.9
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put... 29 2.9
At3g09340.1 68416.m01108 amino acid transporter family protein l... 29 3.8
At1g75050.1 68414.m08717 thaumatin-like protein, putative / path... 29 5.0
At5g01730.1 68418.m00091 expressed protein 28 8.7
At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa... 28 8.7
At3g56700.1 68416.m06307 male sterility protein, putative simila... 28 8.7
At3g50610.1 68416.m05534 hypothetical protein 28 8.7
At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB protein... 28 8.7
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 119 bits (287), Expect = 2e-27
Identities = 57/106 (53%), Positives = 74/106 (69%)
Frame = +2
Query: 494 KGYY*IINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKP 673
KG II V ++K GDKVG+SEA LL L I PFSYGLVV+ VYD+G++F PE+L++
Sbjct: 152 KGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESVYDNGSVFNPEVLNLTE 211
Query: 674 EDLRAKFQAGVANVAALSLAIGYPTYCFSPHSIANGFKNLFGQSLA 811
+DL KF AGV+ + ALSLAI YPT +PH N +KN+ +LA
Sbjct: 212 DDLVEKFAAGVSMITALSLAISYPTVAAAPHMFLNAYKNVLAVALA 257
Score = 103 bits (246), Expect = 2e-22
Identities = 48/85 (56%), Positives = 63/85 (74%)
Frame = +3
Query: 264 NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLG 443
N A LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+ NTGL
Sbjct: 75 NQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLD 134
Query: 444 PEKTSFFQALSIPTKISKGTIESST 518
P +TSFFQ L+IPTKI+KGT+E T
Sbjct: 135 PSQTSFFQVLNIPTKINKGTVEIIT 159
Score = 37.1 bits (82), Expect = 0.014
Identities = 14/22 (63%), Positives = 20/22 (90%)
Frame = +1
Query: 190 LRGSSIVLMGKNTMMRKAIKDH 255
LRG S+VLMGKNTMM+++++ H
Sbjct: 48 LRGDSVVLMGKNTMMKRSVRIH 69
Score = 35.9 bits (79), Expect = 0.033
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = +2
Query: 68 KATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQ 169
KA K Y K+ QLL+EY + +V ADNVGS Q
Sbjct: 7 KAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQ 40
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 113 bits (273), Expect = 1e-25
Identities = 52/106 (49%), Positives = 73/106 (68%)
Frame = +2
Query: 494 KGYY*IINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKP 673
KG II V ++K GDKVG+SEA LL L I PFSYGLVV+ VYD+G++F+PE+LD+
Sbjct: 151 KGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTE 210
Query: 674 EDLRAKFQAGVANVAALSLAIGYPTYCFSPHSIANGFKNLFGQSLA 811
+ L KF +G++ V +L+LA+ YPT +PH N +KN ++A
Sbjct: 211 DQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVA 256
Score = 103 bits (248), Expect = 1e-22
Identities = 48/85 (56%), Positives = 64/85 (75%)
Frame = +3
Query: 264 NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLG 443
N A+ LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+ NTGL
Sbjct: 74 NTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLD 133
Query: 444 PEKTSFFQALSIPTKISKGTIESST 518
P +TSFFQ L+IPTKI+KGT+E T
Sbjct: 134 PSQTSFFQVLNIPTKINKGTVEIIT 158
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = +2
Query: 53 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQ 169
M + KA K Y K+ QL+DEY + +V ADNVGS Q
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQ 39
Score = 37.1 bits (82), Expect = 0.014
Identities = 14/22 (63%), Positives = 20/22 (90%)
Frame = +1
Query: 190 LRGSSIVLMGKNTMMRKAIKDH 255
LRG S+VLMGKNTMM+++++ H
Sbjct: 47 LRGDSVVLMGKNTMMKRSVRIH 68
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 113 bits (273), Expect = 1e-25
Identities = 52/106 (49%), Positives = 73/106 (68%)
Frame = +2
Query: 494 KGYY*IINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKP 673
KG II V ++K GDKVG+SEA LL L I PFSYGLVV+ VYD+G++F+PE+LD+
Sbjct: 151 KGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTE 210
Query: 674 EDLRAKFQAGVANVAALSLAIGYPTYCFSPHSIANGFKNLFGQSLA 811
+ L KF +G++ V +L+LA+ YPT +PH N +KN ++A
Sbjct: 211 DQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVA 256
Score = 103 bits (248), Expect = 1e-22
Identities = 48/85 (56%), Positives = 64/85 (75%)
Frame = +3
Query: 264 NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLG 443
N A+ LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+ NTGL
Sbjct: 74 NTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLD 133
Query: 444 PEKTSFFQALSIPTKISKGTIESST 518
P +TSFFQ L+IPTKI+KGT+E T
Sbjct: 134 PSQTSFFQVLNIPTKINKGTVEIIT 158
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = +2
Query: 53 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQ 169
M + KA K Y K+ QL+DEY + +V ADNVGS Q
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQ 39
Score = 37.1 bits (82), Expect = 0.014
Identities = 14/22 (63%), Positives = 20/22 (90%)
Frame = +1
Query: 190 LRGSSIVLMGKNTMMRKAIKDH 255
LRG S+VLMGKNTMM+++++ H
Sbjct: 47 LRGDSVVLMGKNTMMKRSVRIH 68
>At3g09330.1 68416.m01107 amino acid transporter family protein
belongs to INTERPRO:IPR002422 amino acid/polyamine
transporter, family II
Length = 524
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +2
Query: 656 ILDIKPEDLRAKFQAGVANVAALSLAIGYPTYCFSPHSIANGFKNLFGQSL 808
+L K + L Q G++N L+ G P +C P S+ NG L G SL
Sbjct: 105 LLSEKDDVLFLSSQIGLSNT---DLSYGEPNFCSFPQSVLNGINVLCGISL 152
>At1g60250.1 68414.m06785 zinc finger (B-box type) family protein
contains similarity to zinc finger protein GI:3618320
from [Oryza sativa]
Length = 251
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Frame = -2
Query: 351 CHGPQRGLRG*TRSQRCP*CVATVSRGLDCCPVVFDGFAHHC---VFSHEHDTGAT*RDT 181
CHG R + RC CVA+ S + CP C + SHE R
Sbjct: 132 CHGDNNCERW-MFAMRCELCVASNSNAVVYCPTHNQILCDSCDRMIHSHEDAVPPHSRCK 190
Query: 180 ICXICCEPT 154
+C IC P+
Sbjct: 191 LCVICKRPS 199
>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 890
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 261 NNPALEKLL--PHIKGNVGFVFTRGDLVEVRDKLL 359
N P ++K PHI VGF+ T+GD+ + D L
Sbjct: 781 NQPVIDKTRERPHINDWVGFMLTKGDIKSIVDPKL 815
>At3g09340.1 68416.m01108 amino acid transporter family protein low
similarity to vesicular GABA transporter [Rattus
norvegicus] GI:2587061; belongs to INTERPRO:IPR002422
amino acid/polyamine transporter, family II
Length = 528
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 695 QAGVANVAALSLAIGYPTYCFSPHSIANGFKNLFGQSL 808
Q G++N L+ G P +C P S+ NG L G SL
Sbjct: 118 QVGLSNT---DLSYGEPNFCSFPQSVLNGINVLCGISL 152
>At1g75050.1 68414.m08717 thaumatin-like protein, putative /
pathogenesis-related protein, putative similar to
thaumatin-like protein [Arabidopsis thaliana]
GI:2435406, SP|P28493 Pathogenesis-related protein 5
precursor (PR-5) {Arabidopsis thaliana}; contains Pfam
profile: PF00314 Thaumatin family
Length = 257
Score = 28.7 bits (61), Expect = 5.0
Identities = 25/101 (24%), Positives = 41/101 (40%)
Frame = +1
Query: 55 G*GGQGYLEV*LLR*DHPTLGRVPKMFHRGCR*RGLATDXADSISLRGSSIVLMGKNTMM 234
G GG+ + +V L+ + +G P+ C G AD ++ + + LM +T +
Sbjct: 129 GDGGKDFYDVSLVDGYNVEMGIKPQGGSGDCHYAGCV---ADVNAVCPNELRLMDPHTGI 185
Query: 235 RKAIKDHWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNC 357
A K CC + AT +CSP S + C
Sbjct: 186 IAACKSACAAFNSEEFCCTGAHATPQTCSPTHYSAMFKSAC 226
>At5g01730.1 68418.m00091 expressed protein
Length = 1192
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +3
Query: 432 TGLGPEKTSFFQALSIPTKISKGTIESSTMYTS*SPVTRLELLKPPFSTC*TSLHSHM 605
TG +TS + S PT+ ++SS + S +T +E L P+ TSL+ H+
Sbjct: 822 TGSANSRTSSDE--SPPTQNGSVGVQSSPLDVFPSSITEIEALHAPYQEIFTSLNDHI 877
>At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 666
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -1
Query: 412 TDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLP 299
T+NGA G A S SLS S SP VN + LP
Sbjct: 205 TENGAWNEGLAQYDASSSLSLSMPSQNSPNVNNQSGLP 242
>At3g56700.1 68416.m06307 male sterility protein, putative similar
to SP|Q08891 Male sterility protein 2 {Arabidopsis
thaliana}; contains Pfam profile PF03015: Male sterility
protein
Length = 527
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 271 PSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSK 375
P R HT+R SC ETS +VT+ K++
Sbjct: 33 PRRRLSHTTRRVQTSCFYGETSFEAVTSLVTPKTE 67
>At3g50610.1 68416.m05534 hypothetical protein
Length = 229
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +3
Query: 291 HIKGNVGFVFTRGDLVEVRD-KLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEK 452
H KGNV + D KLL+ VQ + G+ + P H+ G+G +K
Sbjct: 45 HKKGNVNVEGFQDDFKPTEGRKLLKTNVQDHFKTGSTDDFAPTSPGHSPGVGHKK 99
>At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB
protein-related similar to ATP-dependent Clp protease,
ATP-binding subunit ClpB (GI:24982014) [Pseudomonas
putida KT2440]; similar to ClpB protein
(SP:Q9RA63){Thermus thermophilus}
Length = 422
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = -3
Query: 428 VGGNDD*QWGNGTRTSWSLDFVLQQFVTDLNEVSAGEHEANVALDVWQQ 282
+G + + +G+ T + +LQ + +S+GE E +D W Q
Sbjct: 329 IGSHFERCFGSETHLELDKEVILQILAASWSSLSSGEEEGRTIVDQWMQ 377
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,759,492
Number of Sequences: 28952
Number of extensions: 432361
Number of successful extensions: 1241
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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