Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40114
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    29   1.1  
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    28   1.5  
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    27   3.4  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    27   4.4  
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    27   4.4  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    27   4.4  
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.9  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    26   5.9  
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    26   7.8  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    26   7.8  

>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
 Frame = +2

Query: 245 FRS*IAANKERLFAVQNAAEELMKQKPEFVEVISPKMHELQDQFENLQTTTKEKGERLFD 424
           F   I  N+E +   +   E+L  +  +  E  + K HE  +  + LQT  +E  +   D
Sbjct: 583 FEKTIRENEESISLFKEEVEKLTDEITQLSERYNDKCHEFDELQKRLQTLEEENNKAKED 642

Query: 425 ANREV--LLHQ---TCDDIDSWMNELEKQIQ 502
           +  +   LL Q   T  ++DS   E E+  Q
Sbjct: 643 STSKTSNLLEQLKMTEAEVDSLRKENEENKQ 673


>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +2

Query: 416 LFDANREVLLHQTCDDIDSWMNELEKQIQSTIPVAIWPPSIFSC 547
           +FD   ++++H+T D+++      E    + +  A + P IF C
Sbjct: 526 VFDDVGKLIMHKTADELNDLQENDENAFMNCMAEACYMPYIFQC 569


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +1

Query: 583 KAKQVTELETQAEYLQKTVPDKMEEIKEKKKTVEHRFEQLKAPLLERQRHL 735
           K+++    E + E+L+K+  D  +   +KKK  EH  E++KA   E  R L
Sbjct: 404 KSQRSLAEEYEEEFLKKSNADTYKSEADKKKEKEH--EEIKALFSEVSRTL 452


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = +1

Query: 589 KQVTELETQAEYL-QKTVPDKMEEIKEKKKTVEH--RFEQLKAPLLERQRHLAKKKEAFQ 759
           +Q  E E  AE   QK +  K +E   KK+  +   R ++ K   LERQ+   K+K+  +
Sbjct: 612 RQRREAERLAEQAAQKALEAKRQEEARKKREEQRLKREQEKKQQELERQKREEKQKQKER 671

Query: 760 FVAMSRTRSLLVQEKM 807
              + + +    +EKM
Sbjct: 672 EKKLKKQQQEADREKM 687


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 22/74 (29%), Positives = 35/74 (47%)
 Frame = +2

Query: 275 RLFAVQNAAEELMKQKPEFVEVISPKMHELQDQFENLQTTTKEKGERLFDANREVLLHQT 454
           R F V  A +EL K+K   +E+      E QD FEN Q   +      F  +R+  L Q 
Sbjct: 39  RSFCVHYAIKEL-KEKTYNLELYQSLFEEFQDCFENEQLDVEWVESVTF--HRKQNLEQL 95

Query: 455 CDDIDSWMNELEKQ 496
             ++ ++ N L ++
Sbjct: 96  RRELKAYKNNLIRE 109


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/67 (19%), Positives = 31/67 (46%)
 Frame = +1

Query: 544 MQKQQMIETQMAVKAKQVTELETQAEYLQKTVPDKMEEIKEKKKTVEHRFEQLKAPLLER 723
           +QK+  ++ + +   ++  +   + +     +  + EEIKE++   E   E+ + P  E 
Sbjct: 318 IQKENTVQQEASSSEEEAVKSLPETQRTTSRIETQEEEIKEEEMEGEEEEEEEEVPNYES 377

Query: 724 QRHLAKK 744
           +  L  K
Sbjct: 378 ENELEDK 384


>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
 Frame = +1

Query: 568 TQMAVKAKQVTELETQAEYLQKTVPDKMEEIKEKKKTVE---HRFEQLKAPL--LERQRH 732
           T  +  +++  ELE Q + L      K ++IKE K+ +    + +E LKA     E ++ 
Sbjct: 137 TSRSTSSQEKDELEKQVKTLHDLNEQKDKKIKELKERINDLTYDYETLKANADDSEGKQT 196

Query: 733 LAKKKEA 753
           L  K+EA
Sbjct: 197 LVSKREA 203


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 344 SPKMHELQDQFENLQTTTKEKGERLFDANREVLL 445
           +P +++LQD+  +L +  K     L+DA+ E+ L
Sbjct: 500 NPNLNKLQDELISLHSQLKSWKNTLYDASSELAL 533


>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = +1

Query: 532 VNILMQKQQMIETQMAVKAKQVTE----LETQAEYLQKTVPDKMEEIKEKKKTVE 684
           + +L   Q+  +T  A     +T     L   + Y+QK  P+K ++ K KK+T++
Sbjct: 148 LKLLEDAQKEYDTLEAESKNYITSEDLHLGFDSTYVQKKEPEKPKKTKTKKETIQ 202


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 353 MHELQDQFENLQTTTKEKGERL 418
           + EL++Q ENL   TK+  ERL
Sbjct: 456 VEELREQLENLTALTKKLSERL 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,991,282
Number of Sequences: 5004
Number of extensions: 55794
Number of successful extensions: 229
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)