Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40114
         (849 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    24   5.1  
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    24   6.7  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    24   6.7  
EU068741-1|ABU40241.1|  993|Anopheles gambiae anion exchanger pr...    23   8.9  

>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 452 TCDDIDSWMNELEKQIQSTIPVAIW 526
           +C D D W   +E++I+S    A W
Sbjct: 437 SCPDRDLWKRAMEEEIKSLHENATW 461


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 345 RPRCTNSKINLKTCRLPPRRRARGSSTPT 431
           R R   S     +CR PP RR   S+ PT
Sbjct: 258 RRRSPRSGGRWPSCRSPPARRRSRSTRPT 286


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1222

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 15/43 (34%), Positives = 17/43 (39%)
 Frame = +2

Query: 83   T*PHGEAPRPASVAPVLAGLRRTWRMGSGEERYRTRRYLPLRQ 211
            T PHG   R  S       +RR  R    E   RT R +P  Q
Sbjct: 1158 TVPHGRNRRSRSAPSEADTIRRRMRRREMERLRRTARRVPSNQ 1200


>EU068741-1|ABU40241.1|  993|Anopheles gambiae anion exchanger
           protein.
          Length = 993

 Score = 23.4 bits (48), Expect = 8.9
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -1

Query: 807 HLLLDQQASGPRHRDELEGF---LLLGKVTLAF 718
           HLL+ + A GPR++     F   L+ G  +LA+
Sbjct: 643 HLLIPEDARGPRNQPNTALFCTILMFGTFSLAY 675


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 780,693
Number of Sequences: 2352
Number of extensions: 14356
Number of successful extensions: 52
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 90132318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)