Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40114
(849 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g65010.1 68414.m07368 expressed protein similar to endosome-a... 35 0.059
At5g50430.1 68418.m06245 ubiquitin-conjugating enzyme, putative ... 32 0.55
At2g32240.1 68415.m03940 expressed protein contains Pfam profile... 32 0.55
At1g64320.1 68414.m07289 myosin heavy chain-related similar to m... 31 0.73
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela... 31 0.73
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 31 1.3
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 31 1.3
At3g19050.1 68416.m02420 kinesin motor protein-related contains ... 30 2.2
At1g17600.1 68414.m02173 disease resistance protein (TIR-NBS-LRR... 30 2.2
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01... 29 3.0
At5g65050.1 68418.m08182 MADS-box protein (MAF2) 29 3.9
At5g60530.1 68418.m07590 late embryogenesis abundant protein-rel... 29 3.9
At5g08010.1 68418.m00932 expressed protein condensin subunit SMC... 29 3.9
At3g50240.1 68416.m05494 kinesin motor protein-related KINESIN-L... 29 3.9
At5g44020.1 68418.m05387 acid phosphatase class B family protein... 29 5.2
At4g40020.1 68417.m05666 hypothetical protein 29 5.2
At3g45850.1 68416.m04962 kinesin motor protein-related kinesin-r... 29 5.2
At2g05430.1 68415.m00571 expressed protein 29 5.2
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains... 29 5.2
At1g68790.1 68414.m07863 expressed protein 29 5.2
At1g24220.1 68414.m03054 paired amphipathic helix repeat-contain... 29 5.2
At5g41140.1 68418.m05001 expressed protein 28 6.8
At5g16210.1 68418.m01894 HEAT repeat-containing protein contains... 28 6.8
At4g24610.1 68417.m03525 expressed protein 28 6.8
At4g02400.1 68417.m00324 U3 ribonucleoprotein (Utp) family prote... 28 6.8
At1g24560.1 68414.m03090 expressed protein 28 6.8
At5g53020.1 68418.m06585 expressed protein 28 9.0
At5g27220.1 68418.m03247 protein transport protein-related low s... 28 9.0
At5g10140.1 68418.m01174 MADS-box protein flowering locus F (FLF... 28 9.0
>At1g65010.1 68414.m07368 expressed protein similar to
endosome-associated protein (GI:1016368) [Homo sapiens];
similar to Centromeric protein E (CENP-E protein)
(Swiss-Prot:Q02224) [Homo sapiens]
Length = 1318
Score = 35.1 bits (77), Expect = 0.059
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Frame = +1
Query: 532 VNILMQKQQMIETQMAVKAKQVTELETQAEYLQKTVPDKMEEIKEKKKTVEHRFEQLKAP 711
V+ + K ++TQ+ + + + + Q E L+K ++++KE +K VE E+LK
Sbjct: 46 VHSRLVKGTELQTQLNQIQEDLKKADEQIELLKKDKAKAIDDLKESEKLVEEANEKLKEA 105
Query: 712 LLERQR-HLAKKKEAFQFVAMSRTRSLLVQEK 804
L ++R + + E F+ V + + VQ+K
Sbjct: 106 LAAQKRAEESFEVEKFRAVELEQAGLEAVQKK 137
>At5g50430.1 68418.m06245 ubiquitin-conjugating enzyme, putative
similar to ubiquitin conjugating enzyme 6 from [Homo
sapiens] GI:14029267, [Mus musculus] GI:14029263;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 243
Score = 31.9 bits (69), Expect = 0.55
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Frame = +1
Query: 529 SVNI-LMQKQQMIETQMAVKAKQVTELETQAEYLQKTVPDKM--EEIKEKKKTVEHR--F 693
SVN + +KQ++ ++ +A K VT + EY++K ++ EE ++ T F
Sbjct: 124 SVNTSVAEKQRLAKSSLAFNCKSVTFRKLFPEYVEKYSQQQVAEEEAATQQTTTSENQDF 183
Query: 694 EQLKAPLLERQRHLAKKKEAFQFVAMSRTR 783
Q +E ++ + KKE+ Q V + R
Sbjct: 184 PQKDNAKVESEKSVGLKKESIQEVGLKERR 213
>At2g32240.1 68415.m03940 expressed protein contains Pfam profile:
PF04508 viral A-type inclusion protein repeat
Length = 775
Score = 31.9 bits (69), Expect = 0.55
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Frame = +1
Query: 502 EHHTGS-DLASVNILMQKQQMIETQMAVKAKQVTELETQAEYLQKTVPDKMEEIKEKKKT 678
EH G D+ + +L ++++ Q ++ ++ + Q+E L+ + EEI+ KKK
Sbjct: 615 EHIAGERDVLNEQVLQLQKELQAAQSSIDEQKQAHSQKQSE-LESALKKSQEEIEAKKKA 673
Query: 679 VEHRFEQLKAPLLER-QRHLAKKKEAFQFVAMSRTRSLLVQEKMPSGHKHR 828
V FE + L ++ Q AK KE ++R + + P+ K +
Sbjct: 674 VT-EFESMVKDLEQKVQLADAKTKETEAMDVGVKSRDIDLSFSSPTKRKSK 723
>At1g64320.1 68414.m07289 myosin heavy chain-related similar to
myosin heavy chain (GI:4249703) [Rana catesbeiana];
similar to smooth muscle myosin heavy chain SM2
(GI:2352945) [Homo sapiens]
Length = 476
Score = 31.5 bits (68), Expect = 0.73
Identities = 26/130 (20%), Positives = 55/130 (42%), Gaps = 2/130 (1%)
Frame = +1
Query: 403 EGREALRRQQGSAASPNLRRHRLMDERT*EANTEHHTGSDLASVNILMQKQ--QMIETQM 576
E L ++ ++ L +E E N L N ++ ++ ++ M
Sbjct: 114 ESEAKLEKKVEEVTETKMQLKSLKEETEEERNRLSEEIDQLKGENQMLHRRISELDSLHM 173
Query: 577 AVKAKQVTELETQAEYLQKTVPDKMEEIKEKKKTVEHRFEQLKAPLLERQRHLAKKKEAF 756
+K K E+E ++ L V D+ + +KE+ + +L A + ++QR L ++K+
Sbjct: 174 EMKTKSAHEMEDASKKLDTEVSDQKKLVKEQDDII----RRLSAKIKDQQRLLKEQKDTI 229
Query: 757 QFVAMSRTRS 786
A + +S
Sbjct: 230 DKFAEDQKQS 239
>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 1128
Score = 31.5 bits (68), Expect = 0.73
Identities = 23/102 (22%), Positives = 55/102 (53%), Gaps = 7/102 (6%)
Frame = +1
Query: 553 QQMIETQMAVKAKQVTELETQAEYLQKTVPD----KMEEIKEKKKTVEHRFEQLKAPLLE 720
Q++I+ Q V ++ E E + E ++K++ K+EE++ +K ++H E+L+ +
Sbjct: 372 QKLIDDQKEVLGSKMLEFELECEEIRKSLDKELQRKIEELERQKVEIDHSEEKLE----K 427
Query: 721 RQRHLAKKKEAFQFVAM---SRTRSLLVQEKMPSGHKHRLTV 837
R + + KK + M ++ +++ +EK+ + RL++
Sbjct: 428 RNQAMNKKFDRVNEKEMDLEAKLKTIKEREKIIQAEEKRLSL 469
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +1
Query: 532 VNILMQKQQMIETQMAVKAKQVTELETQAEYLQKTVP--DKMEEIKEKKKTVEHRFEQLK 705
V++L Q+++++ + +V+ L + LQ T+ EE++E+ + E R ++
Sbjct: 784 VSVLKQEKELLSNAEKRASDEVSALSQRVYRLQATLDTVQSTEEVREETRAAERRKQEEH 843
Query: 706 APLLERQRHLAKKK 747
L+R+ AKK+
Sbjct: 844 IKQLQREWAEAKKE 857
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/66 (28%), Positives = 35/66 (53%)
Frame = +1
Query: 607 ETQAEYLQKTVPDKMEEIKEKKKTVEHRFEQLKAPLLERQRHLAKKKEAFQFVAMSRTRS 786
E + +++ + EEI++K+K + +Q L +Q+ A K EAF+ ++ S
Sbjct: 250 EEEERRIEEEREREAEEIRQKRKIRKMEKKQEGLILTAKQKRDAAKNEAFRKRVLTDAGS 309
Query: 787 LLVQEK 804
LLV +K
Sbjct: 310 LLVADK 315
>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
profile: PF00225 Kinesin motor domain; contains
non-consensus splice site (GC) at intron 12
Length = 2722
Score = 29.9 bits (64), Expect = 2.2
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Frame = +2
Query: 260 AANKERLFAVQNAAEELMKQKPEF----------VEVISPKMHELQDQFENLQTTTKEKG 409
AA E + +QN E L K+ +F VE++ +M ELQD+ + ++
Sbjct: 1028 AATAEVIVCLQNELEVLQKEVNDFQSKENVTEKQVEILETQMEELQDKLRDTTMDNEQLQ 1087
Query: 410 ERLFDANREVLLHQTCDDIDSWMNELEK 493
E+L + E+L+ ++++ +ELE+
Sbjct: 1088 EQLRGKDMELLI--ISNEMELLTSELEE 1113
>At1g17600.1 68414.m02173 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1025
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 377 ENLQTTTKEKGERLFDANREVLLHQTCDDIDSWMNE 484
EN+++ +K+ G L +E+L CDDI W E
Sbjct: 240 ENIKSVSKDNGHDLKHLQKELLSSILCDDIRLWSVE 275
>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01612:
reticulocyte binding protein; contains TIGRFAM TIGR00864:
polycystin cation channel protein; similar to
fimbriae-associated protein Fap1 [Streptococcus
parasanguinis] (GI:3929312)
Length = 1498
Score = 29.5 bits (63), Expect = 3.0
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 14/85 (16%)
Frame = +1
Query: 547 QKQQMIETQMAVKAKQ----VTELETQAEYLQKTVPDKMEE----IKEK----KKTVEHR 690
QK Q +++ AVK Q VTEL + E ++K+ + EE KE+ KK E R
Sbjct: 1167 QKSQTTKSKKAVKPDQPPSIVTELVSGKEEIEKSATPEEEEPPKLTKEEEELIKKEEEKR 1226
Query: 691 FEQLKAPLLERQR--HLAKKKEAFQ 759
++ A + E+ R +AK KEA +
Sbjct: 1227 KQKEAAKMKEQHRLEEIAKAKEAME 1251
>At5g65050.1 68418.m08182 MADS-box protein (MAF2)
Length = 182
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +1
Query: 520 DLASVNILMQKQQMIETQMAVKAKQVTELET-QAEYLQKTVPDK 648
D ASV+ L+ ++ +ET ++V + TEL + + LQKTV K
Sbjct: 110 DNASVDTLISLEEQLETALSVTRARKTELMMGEVKSLQKTVGKK 153
>At5g60530.1 68418.m07590 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 439
Score = 29.1 bits (62), Expect = 3.9
Identities = 22/95 (23%), Positives = 47/95 (49%)
Frame = +1
Query: 547 QKQQMIETQMAVKAKQVTELETQAEYLQKTVPDKMEEIKEKKKTVEHRFEQLKAPLLERQ 726
++Q+ + + A K K+ E + + E +K K +E K+K + + E+ + E++
Sbjct: 61 KEQEKKDKEKAAKDKKEKEKKDKEEKEKKDKERKEKEKKDKLEKEKKDKERKEKERKEKE 120
Query: 727 RHLAKKKEAFQFVAMSRTRSLLVQEKMPSGHKHRL 831
R +KK+ + A +R R L +P+G + +
Sbjct: 121 RKAKEKKDKEESEAAARYRIL---SPLPTGQEQAM 152
>At5g08010.1 68418.m00932 expressed protein condensin subunit SMC4,
Drosophila melanogaster, EMBL:AF186472
Length = 566
Score = 29.1 bits (62), Expect = 3.9
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
Frame = +1
Query: 379 KLADYHQGEGREALRRQQGSAASPNLRRHRLMDERT*EANTEHHTGSDLASVNILMQKQQ 558
KL+D + E + QG + R R DE +N E + S S N ++ ++
Sbjct: 301 KLSDVFELEPDFEVEFAQGELRDDQVERQRF-DETV--SNQERSSNSTPESGNYIVSPRE 357
Query: 559 MIETQMAV----KAKQVTELETQAEYLQKTVPDKMEEIKEKKKTVEHRFE 696
+ + V K++ ELE + Q+ V + E +EKKK + +E
Sbjct: 358 LSLRLLGVINSCYEKRIKELENALQESQRKVEQLVIESEEKKKPLSRIWE 407
>At3g50240.1 68416.m05494 kinesin motor protein-related KINESIN-LIKE
PROTEIN KIF4, Homo sapiens, EMBL:AF179308
Length = 1051
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/79 (25%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Frame = +1
Query: 586 AKQVTELETQAEYLQKTVPDKMEEIKEKKKT------VEHRFEQLKAPLLERQRHLAKKK 747
A ++ LETQ L+K +++E +K+K+K+ ++ + +KA ++ Q+ + ++
Sbjct: 587 AHKLKALETQILNLKKKQENQVEVLKQKQKSEDAAKRLKTEIQCIKAQKVQLQQKMKQEA 646
Query: 748 EAFQFVAMSRTRSLLVQEK 804
E F+ S+ + LL +K
Sbjct: 647 EQFRQWKASQEKELLQLKK 665
>At5g44020.1 68418.m05387 acid phosphatase class B family protein
similar to SP|P15490 STEM 28 kDa glycoprotein precursor
(Vegetative storage protein A) {Glycine max}, acid
phosphatase [Glycine max] GI:3341443; contains Pfam
profile PF03767: HAD superfamily (subfamily IIIB)
phosphatase
Length = 272
Score = 28.7 bits (61), Expect = 5.2
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +2
Query: 449 QTCDDIDSWMNELEKQIQSTIP 514
+TCD +D+W+ +++ + STIP
Sbjct: 114 KTCDGMDAWIFDIDDTLLSTIP 135
>At4g40020.1 68417.m05666 hypothetical protein
Length = 615
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/76 (25%), Positives = 41/76 (53%)
Frame = +1
Query: 523 LASVNILMQKQQMIETQMAVKAKQVTELETQAEYLQKTVPDKMEEIKEKKKTVEHRFEQL 702
+A+ NI K+ + E ++A++ ++ L Q +++P ++ E+ EKK + + E+
Sbjct: 353 VANDNIKKLKKMLSEIEVAMEEEKQRSLNRQ-----ESMPKEVVEVVEKKIEEKEKKEEK 407
Query: 703 KAPLLERQRHLAKKKE 750
K E++ +KKE
Sbjct: 408 KENKKEKKESKKEKKE 423
>At3g45850.1 68416.m04962 kinesin motor protein-related
kinesin-related protein TKRP125, Nicotiana tabacum,
PIR:T02017
Length = 1058
Score = 28.7 bits (61), Expect = 5.2
Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Frame = +1
Query: 526 ASVNILMQKQQMIETQMAVKAKQVTELE---TQAEYLQKTVPDKMEEIKEKKKTVEHRFE 696
A + +K + +E Q K K+V +L+ + L + +K+E+ ++K + EH
Sbjct: 441 AEKKAMAEKIERLELQSESKDKRVVDLQELYNSQQILTAELSEKLEKTEKKLEETEHSLF 500
Query: 697 QLKAPLLERQRHLAKKKEAFQFVAMSRTRSLLVQ 798
L+ RQ + K++ F + ++ LV+
Sbjct: 501 DLEEKY--RQANATIKEKEFVISNLLKSEKSLVE 532
>At2g05430.1 68415.m00571 expressed protein
Length = 188
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/72 (23%), Positives = 37/72 (51%)
Frame = +1
Query: 520 DLASVNILMQKQQMIETQMAVKAKQVTELETQAEYLQKTVPDKMEEIKEKKKTVEHRFEQ 699
DL + ++ +Q + E ++ + +LE A + + K+EEI+ KK ++R +
Sbjct: 74 DLIDMINMLPQQSLFEAELKEAENTILDLEA-AGFKLDWLKRKLEEIRVTKKKAKNRTTR 132
Query: 700 LKAPLLERQRHL 735
++ + Q+HL
Sbjct: 133 MRELDRKIQKHL 144
>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 1340
Score = 28.7 bits (61), Expect = 5.2
Identities = 22/101 (21%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Frame = +1
Query: 547 QKQQMIETQMAVKAKQVTELETQAEYLQKTVPDKMEEIKEKKKTVEH-RFEQLKAPLLER 723
+K++ +E A +TE ET ++ D EIK K +T +H + + + +R
Sbjct: 1208 KKEENLEKTSGTVADPITEAETDNRKEERGPNDSKTEIKPKSETEKHGKQDGGTSDAAKR 1267
Query: 724 QRHLAKK-KEAFQFVAMSRTRSLLVQEKMPSGHKHRLTVTH 843
+ + K+ +AF+F ++ + V++ + H ++H
Sbjct: 1268 EETVDKELLQAFRFFDRNQAGYVRVEDMRVTIHSLGKFLSH 1308
>At1g68790.1 68414.m07863 expressed protein
Length = 1085
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/72 (25%), Positives = 40/72 (55%)
Frame = +1
Query: 544 MQKQQMIETQMAVKAKQVTELETQAEYLQKTVPDKMEEIKEKKKTVEHRFEQLKAPLLER 723
M+ ++++ Q AV + E E + E +++++ EE++ KK +E QL+ + +
Sbjct: 347 MEIGKLLDDQKAVLDSRRREFEMELEQMRRSLD---EELEGKKAEIE----QLQVEISHK 399
Query: 724 QRHLAKKKEAFQ 759
+ LAK++ A +
Sbjct: 400 EEKLAKREAALE 411
>At1g24220.1 68414.m03054 paired amphipathic helix repeat-containing
protein weak similarity to transcription co-repressor
Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 744
Score = 28.7 bits (61), Expect = 5.2
Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Frame = +1
Query: 457 RRHRLMDERT*EANTEHHTGSDLASVNILMQKQQMIETQMAVKA-KQVTELETQAEYLQK 633
+RH +D + AN E+H L ++ L+ + K+ K+V + + +
Sbjct: 88 QRHESVDAKKKRANRENHRKKKLKCLDSLVFPPMTKKIDEGKKSVKKVHKKFLVLSKVDR 147
Query: 634 TVPDKMEEIKEKKKTVEHRFEQLKAPLLERQRHLAKKKEAF 756
T+P + K +T+ + L+ L + + ++ KEAF
Sbjct: 148 TIPPDANKELRKSRTMFGKSVPLEKTLDDARSYIDSVKEAF 188
>At5g41140.1 68418.m05001 expressed protein
Length = 983
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/87 (21%), Positives = 42/87 (48%)
Frame = +1
Query: 544 MQKQQMIETQMAVKAKQVTELETQAEYLQKTVPDKMEEIKEKKKTVEHRFEQLKAPLLER 723
+Q+Q ++ + + V ELE E L+ + + +E E +R ++L+ +
Sbjct: 528 VQEQLKMQYECSSSLVNVNELENHVESLEAKLKKQYKECSESL----YRIKELETQIKGM 583
Query: 724 QRHLAKKKEAFQFVAMSRTRSLLVQEK 804
+ L K+ + F+ + TR+ + QE+
Sbjct: 584 EEELEKQAQIFEGDIEAVTRAKVEQEQ 610
>At5g16210.1 68418.m01894 HEAT repeat-containing protein contains
Pfam profile PF02985: HEAT repeat
Length = 1180
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/75 (22%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = +1
Query: 589 KQVTELETQAEYLQKTVPDKMEEIKEKKKTVEHRFEQL---KAPLLERQRHLAKKKEAFQ 759
+Q+ E LQK + D+ ++++ K++ EH+ L +A + + H+ + A Q
Sbjct: 248 EQIGAFNKSTESLQKDLRDREKQVQSLKQSSEHQRRNLNDCRAEITSLKMHI-EGSRAGQ 306
Query: 760 FVAMSRTRSLLVQEK 804
+V+++ + +Q K
Sbjct: 307 YVSLNEGDPVKLQSK 321
>At4g24610.1 68417.m03525 expressed protein
Length = 1145
Score = 28.3 bits (60), Expect = 6.8
Identities = 20/88 (22%), Positives = 35/88 (39%)
Frame = +1
Query: 514 GSDLASVNILMQKQQMIETQMAVKAKQVTELETQAEYLQKTVPDKMEEIKEKKKTVEHRF 693
G L+ V ++++ + Q V+ + L+K + D E + E + +
Sbjct: 978 GDRLSEVTVMLRAKFRSYLQAVVEKLVENSKLQKTTMLKKILQDSKESVGESD--IRSKM 1035
Query: 694 EQLKAPLLERQRHLAKKKEAFQFVAMSR 777
LK L HL E F+A+SR
Sbjct: 1036 NNLKEQLTNTVNHLHSVCETHVFIALSR 1063
>At4g02400.1 68417.m00324 U3 ribonucleoprotein (Utp) family protein
contains Pfam profile: PF04615 Utp14 protein
Length = 858
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = +1
Query: 547 QKQQMIETQMAVKAKQVTELETQAEYLQKTV--PDKMEEI-KEKKKTVEHRFEQLKAPLL 717
+ +QM++ + +K+ E+ +QAE +Q+ D +EE K+K++ + + + P+L
Sbjct: 643 EAEQMVDGILTSASKETYEIPSQAELIQRAFAGDDVVEEFEKDKQEVLNQEVPEPEKPVL 702
>At1g24560.1 68414.m03090 expressed protein
Length = 678
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/71 (21%), Positives = 35/71 (49%)
Frame = +1
Query: 541 LMQKQQMIETQMAVKAKQVTELETQAEYLQKTVPDKMEEIKEKKKTVEHRFEQLKAPLLE 720
+++ Q ++E + +L+TQ + L + + ++EE+KEK++ E L +
Sbjct: 475 IVELQHLLEASREETSSLRKQLDTQTKELNQRMR-QIEELKEKERIANENVEGLMTDIAA 533
Query: 721 RQRHLAKKKEA 753
+ + + K A
Sbjct: 534 AEEEITRWKVA 544
>At5g53020.1 68418.m06585 expressed protein
Length = 721
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 287 VQNAAEELMKQKPEFVEVISPKMHELQDQFENLQTTTKEKGERLFDANREV 439
VQ + EL +QK F+E+ S +L+ + + KG L D + E+
Sbjct: 154 VQEHSSELWRQKKTFLELAS-SQRQLEAELSRANKQIEAKGHELEDLSLEI 203
>At5g27220.1 68418.m03247 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1181
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/95 (20%), Positives = 45/95 (47%)
Frame = +1
Query: 553 QQMIETQMAVKAKQVTELETQAEYLQKTVPDKMEEIKEKKKTVEHRFEQLKAPLLERQRH 732
++ +E ++ K K +T + + +K + E+ + + VE + +QL+ ++ +RH
Sbjct: 258 RRKLEEEIERKTKDLTLVMDKIAECEKLFERRSLELIKTQGEVELKGKQLEQMDIDLERH 317
Query: 733 LAKKKEAFQFVAMSRTRSLLVQEKMPSGHKHRLTV 837
+ + + S+TRS + E++ K V
Sbjct: 318 RGEVNVVMEHLEKSQTRSRELAEEIERKRKELTAV 352
>At5g10140.1 68418.m01174 MADS-box protein flowering locus F (FLF)
identical to FLOWERING LOCUS C protein (MADS box protein
FLOWERING LOCUS F) (Swiss-Prot:Q9S7Q7) [Arabidopsis
thaliana]
Length = 196
Score = 27.9 bits (59), Expect = 9.0
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Frame = +1
Query: 514 GSDLASVNI--LMQKQQMIETQMAVKAKQVTELETQAEYLQKTVPDKMEEIKEKKKTVEH 687
GS++ +V+I L+Q ++ +ET ++V + TEL + K V E +KEK+K ++
Sbjct: 106 GSNVKNVSIDALVQLEEHLETALSVTRAKKTEL------MLKLV----ENLKEKEKMLKE 155
Query: 688 RFEQLKAPLLERQRHLAKKKE 750
Q+ A +E H+ + E
Sbjct: 156 E-NQVLASQMENNHHVGAEAE 175
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,300,460
Number of Sequences: 28952
Number of extensions: 316834
Number of successful extensions: 1377
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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